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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.2 nTPM
HPA:2.2 nTPM
GTEx:3.5 nTPM
FANTOM5:8.8 Scaled Tags Per Million
Pig:3.3 nTPM
Mouse:6.5 nTPM
Allen mouse:0.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.5
1781 Male, age 74, unknown 2.5
2288 Male, age 75, left hemisphere 1.7
1857 Female, age 85, left hemisphere 0.3
1854 Male, age 80, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 1.3
2284 Female, age 91, both hemispheres 5.1
2198 Male, age 80, both hemispheres 2.4
2196 Female, age 79, unknown 1.7
1956 Male, age 74, unknown 0.9
2491 Male, age 75, both hemispheres 0.5
2568 Male, age 61, both hemispheres 0.4
2645 Female, age 72, unknown 0.4
2292 Female, age 85, both hemispheres 0.2
2392 Female, age 94, both hemispheres 0.2
Globus pallidus, externus
nTPM: 0.0
2395 Male, age 75, both hemispheres 0.1
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
2287 Male, age 75, right hemisphere 0.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.8
1856 Female, age 91, right hemisphere 3.6
2286 Male, age 75, left hemisphere 1.7
1806 Female, age 85, left hemisphere 0.7
2698 Female, age 72, unknown 0.4
1783 Male, age 74, unknown 0.2
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2821 Male, age 75, both hemispheres 0.2
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 1.4
1812 Female, age 91, both hemispheres 3.7
2029 Male, age 61, right hemisphere 1.6
2775 Male, age 80, right hemisphere 1.3
2195 Female, age 85, both hemispheres 0.4
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 2.2
2487 Female, age 94, left hemisphere 2.9
1998 Female, age 91, both hemispheres 2.6
1846 Male, age 80, right hemisphere 2.1
2856 Male, age 75, right hemisphere 1.3
Putamen
nTPM: 0.5
1838 Male, age 80, right hemisphere 1.7
1937 Female, age 91, right hemisphere 1.1
2647 Male, age 75, left hemisphere 0.7
1829 Male, age 74, unknown 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 1.4
2629 Female, age 94, right hemisphere 3.3
2031 Female, age 72, unknown 2.9
1960 Male, age 74, unknown 2.1
2009 Female, age 91, both hemispheres 1.6
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.5
Samples: 246

Max nTPM: 26.4
Min nTPM: 0.1
Std nTPM: 3.4
Median nTPM: 2.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 26.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 19.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 18.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 17.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 16.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 15.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 13.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 11.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 11.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 10.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 10.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.9
Samples: 246

Max nTPM: 33.0
Min nTPM: 0.0
Std nTPM: 3.2
Median nTPM: 2.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 33.0
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 21.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 19.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 14.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 11.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 10.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 9.8
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 9.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 9.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 9.1
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 8.0
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Brain - Putamen (basal ganglia)
Average nTPM: 2.1
Samples: 205

Max nTPM: 13.6
Min nTPM: 0.1
Std nTPM: 1.7
Median nTPM: 1.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 13.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 8.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 7.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 6.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 6.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 6.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 5.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 5.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 5.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 5.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 5.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.5
FF:10164-103B2 76 years, female 3.5
Globus pallidus
Scaled Tags Per Million: 0.3
FF:10161-103A8 76 years, female 0.7
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 8.8
FF:10037-101F1 23-56 years, mixed 8.8
Putamen
Scaled Tags Per Million: 8.2
FF:10176-103C5 60 years, female 8.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.3
Pig sample Sample description nTPM
Caudate
nTPM: 0.8
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.3
Sample A Female 1.5
Sample B Female 1.1
Sample C Male 0.3
Sample D Male 0.3
Putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.3
Sample C Male 0.4
Sample D Male 0.6
Septum
nTPM: 3.4
Samples: 4

Max nTPM: 7.6
Min nTPM: 0.6
Sample A Female 1.5
Sample B Female 3.7
Sample C Male 7.6
Sample D Male 0.6
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 2.0
Sample C Male 1.9
Sample D Male 0.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.2
Sample A Male 1.2
Sample B Male 3.0
Sample C Female 3.2
Sample D Female 3.5
Septum
nTPM: 4.4
Samples: 4

Max nTPM: 6.1
Min nTPM: 2.2
Sample A Male 6.1
Sample B Male 3.5
Sample C Female 2.2
Sample D Female 5.7
Ventral forebrain
nTPM: 6.5
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.3
Sample A Male 6.3
Sample B Male 7.0
Sample C Female 6.4
Sample D Female 6.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
81790726 Antisense, RP_090820_05_A09, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.7
81790726 Antisense, RP_090820_05_A09, Mouse strain C57BL/6J (56 days, male) 0.7

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