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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.1 nTPM
HPA:38.1 nTPM
GTEx:52.4 nTPM
FANTOM5:124.4 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:91.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.9
1870 Female, age 42, unknown 35.8
2828 Female, age 72, unknown 35.6
2586 Male, age 75, left hemisphere 33.8
1833 Male, age 53, unknown 32.0
2411 Female, age 72, unknown 31.7
1827 Male, age 72, unknown 30.4
1830 Male, age 51, unknown 29.9
2019 Male, age 18, unknown 29.1
2219 Male, age 76, both hemispheres 27.2
2666 Male, age 74, left hemisphere 23.0
Dorsal raphe nucleus
nTPM: 37.4
2016 Female, age 72, unknown 41.7
2298 Female, age 72, unknown 40.0
2047 Male, age 72, unknown 36.6
1828 Male, age 53, unknown 35.2
2750 Male, age 76, both hemispheres 33.4
Inferior colliculus
nTPM: 38.1
1848 Female, age 42, unknown 39.1
2097 Female, age 72, unknown 39.0
1890 Male, age 53, unknown 38.8
2849 Male, age 72, unknown 35.3
Median raphe nucleus
nTPM: 32.2
2220 Male, age 76, midline 32.2
Pedunculopontine tegmental nucleus
nTPM: 33.3
2334 Male, age 80, both hemispheres 36.1
1921 Female, age 85, both hemispheres 35.8
2338 Male, age 61, both hemispheres 28.0
Periaquaductal grey, anterior
nTPM: 34.4
2502 Female, age 75, unknown 36.4
1947 Male, age 18, unknown 34.4
1795 Male, age 51, unknown 32.5
Periaquaductal grey, dorsal
nTPM: 35.3
1840 Male, age 53, unknown 41.3
2850 Male, age 76, both hemispheres 37.6
2464 Female, age 72, unknown 33.1
1831 Male, age 72, unknown 29.2
Periaquaductal grey, lateral
nTPM: 36.3
2272 Male, age 74, both hemispheres 40.9
2140 Male, age 76, both hemispheres 35.2
2053 Male, age 18, unknown 32.9
Pretectal area
nTPM: 33.2
2667 Female, age 75, unknown 40.9
2273 Male, age 74, both hemispheres 39.3
2224 Female, age 72, unknown 39.2
1944 Female, age 72, unknown 35.7
2825 Male, age 18, unknown 34.6
2316 Male, age 76, right hemisphere 32.7
1816 Male, age 51, unknown 31.3
1815 Male, age 53, unknown 28.8
2007 Male, age 72, unknown 28.8
1817 Female, age 42, unknown 28.6
2407 Male, age 75, both hemispheres 25.6
Red nucleus
nTPM: 34.4
2769 Male, age 72, unknown 38.2
2503 Female, age 72, unknown 38.1
1954 Female, age 42, unknown 37.5
2227 Male, age 72, unknown 37.3
1821 Female, age 72, unknown 37.0
1904 Male, age 53, unknown 36.5
2823 Male, age 76, right hemisphere 35.9
1865 Male, age 51, unknown 35.0
2725 Female, age 75, unknown 33.5
2785 Male, age 18, unknown 30.8
2588 Male, age 74, left hemisphere 29.0
2584 Male, age 75, left hemisphere 23.4
Substantia nigra
nTPM: 34.4
2409 Female, age 72, unknown 42.3
2699 Male, age 18, unknown 41.0
2241 Male, age 72, unknown 37.8
1916 Female, age 42, unknown 37.5
1851 Male, age 51, unknown 36.8
1889 Female, age 72, unknown 35.5
2583 Male, age 75, right hemisphere 30.7
1941 Male, age 53, unknown 29.1
2590 Female, age 75, unknown 28.5
2665 Male, age 74, both hemispheres 25.2
Superior colliculus
nTPM: 31.7
1995 Male, age 72, unknown 34.9
1913 Female, age 42, unknown 33.8
1796 Male, age 53, unknown 33.4
1895 Male, age 76, right hemisphere 33.4
2087 Female, age 72, unknown 32.9
2261 Male, age 18, unknown 31.8
1839 Male, age 51, unknown 31.4
2587 Male, age 74, left hemisphere 29.8
2668 Female, age 75, unknown 29.1
2664 Male, age 75, both hemispheres 26.1
Ventral tegmental area
nTPM: 34.7
1915 Female, age 42, unknown 39.1
1942 Male, age 51, unknown 35.6
2218 Male, age 76, both hemispheres 34.8
2021 Male, age 53, unknown 34.2
2223 Female, age 72, unknown 32.9
2410 Female, age 72, unknown 31.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.4
Samples: 139

Max nTPM: 102.9
Min nTPM: 18.7
Std nTPM: 16.0
Median nTPM: 50.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 102.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 94.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 92.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 91.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 89.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 86.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 84.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 83.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 81.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 80.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.4
FF:10158-103A5 76 years, female 124.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 10.9
Sample C Male 15.2
Sample D Male 11.6
Periaqueductal gray
nTPM: 11.3
Samples: 3

Max nTPM: 12.1
Min nTPM: 10.8
Sample B Female 10.8
Sample C Male 12.1
Sample D Male 11.1
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 9.7
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 9.7
Sample C Male 9.5
Sample D Male 9.4
Superior colliculi
nTPM: 12.3
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.6
Sample A Female 11.7
Sample B Female 10.6
Sample C Male 15.4
Sample D Male 11.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.0
Samples: 4

Max nTPM: 96.6
Min nTPM: 85.6
Sample A Male 90.3
Sample B Male 85.6
Sample C Female 96.6
Sample D Female 95.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70429160 Antisense, RP_050614_01_B04, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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