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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.8 nTPM
HPA:7.8 nTPM
GTEx:16.9 nTPM
FANTOM5:53.9 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:13.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.6
2586 Male, age 75, left hemisphere 9.0
2666 Male, age 74, left hemisphere 8.1
1827 Male, age 72, unknown 7.6
2219 Male, age 76, both hemispheres 7.6
1870 Female, age 42, unknown 7.5
1830 Male, age 51, unknown 7.4
2411 Female, age 72, unknown 7.4
2019 Male, age 18, unknown 7.3
2828 Female, age 72, unknown 7.3
1833 Male, age 53, unknown 7.2
Dorsal raphe nucleus
nTPM: 6.6
2047 Male, age 72, unknown 6.9
2016 Female, age 72, unknown 6.7
2750 Male, age 76, both hemispheres 6.7
1828 Male, age 53, unknown 6.5
2298 Female, age 72, unknown 6.4
Inferior colliculus
nTPM: 6.9
2849 Male, age 72, unknown 7.4
1890 Male, age 53, unknown 7.1
1848 Female, age 42, unknown 6.7
2097 Female, age 72, unknown 6.7
Median raphe nucleus
nTPM: 6.9
2220 Male, age 76, midline 6.9
Pedunculopontine tegmental nucleus
nTPM: 6.8
1921 Female, age 85, both hemispheres 7.0
2334 Male, age 80, both hemispheres 6.9
2338 Male, age 61, both hemispheres 6.5
Periaquaductal grey, anterior
nTPM: 7.3
2502 Female, age 75, unknown 7.7
1795 Male, age 51, unknown 7.1
1947 Male, age 18, unknown 6.9
Periaquaductal grey, dorsal
nTPM: 6.7
2464 Female, age 72, unknown 6.9
1831 Male, age 72, unknown 6.8
2850 Male, age 76, both hemispheres 6.6
1840 Male, age 53, unknown 6.5
Periaquaductal grey, lateral
nTPM: 6.5
2053 Male, age 18, unknown 6.8
2140 Male, age 76, both hemispheres 6.7
2272 Male, age 74, both hemispheres 6.1
Pretectal area
nTPM: 7.0
2407 Male, age 75, both hemispheres 7.6
2007 Male, age 72, unknown 7.5
1815 Male, age 53, unknown 7.3
1817 Female, age 42, unknown 7.3
1816 Male, age 51, unknown 7.2
2825 Male, age 18, unknown 7.2
2316 Male, age 76, right hemisphere 7.0
1944 Female, age 72, unknown 6.7
2667 Female, age 75, unknown 6.5
2224 Female, age 72, unknown 6.3
2273 Male, age 74, both hemispheres 6.1
Red nucleus
nTPM: 7.8
2588 Male, age 74, left hemisphere 9.0
2725 Female, age 75, unknown 8.6
2503 Female, age 72, unknown 8.3
2584 Male, age 75, left hemisphere 8.2
1904 Male, age 53, unknown 7.9
1865 Male, age 51, unknown 7.8
1954 Female, age 42, unknown 7.7
2227 Male, age 72, unknown 7.7
2769 Male, age 72, unknown 7.5
2785 Male, age 18, unknown 7.5
1821 Female, age 72, unknown 7.1
2823 Male, age 76, right hemisphere 7.0
Substantia nigra
nTPM: 6.9
2665 Male, age 74, both hemispheres 7.4
1941 Male, age 53, unknown 7.3
2583 Male, age 75, right hemisphere 7.2
2699 Male, age 18, unknown 7.2
1889 Female, age 72, unknown 6.8
1916 Female, age 42, unknown 6.8
2590 Female, age 75, unknown 6.8
1851 Male, age 51, unknown 6.7
2409 Female, age 72, unknown 6.3
2241 Male, age 72, unknown 6.0
Superior colliculus
nTPM: 7.2
2664 Male, age 75, both hemispheres 8.0
1839 Male, age 51, unknown 7.2
1913 Female, age 42, unknown 7.2
1995 Male, age 72, unknown 7.2
2261 Male, age 18, unknown 7.2
2587 Male, age 74, left hemisphere 7.2
2087 Female, age 72, unknown 7.1
1796 Male, age 53, unknown 7.0
1895 Male, age 76, right hemisphere 7.0
2668 Female, age 75, unknown 6.6
Ventral tegmental area
nTPM: 6.8
2223 Female, age 72, unknown 7.1
1942 Male, age 51, unknown 7.0
2021 Male, age 53, unknown 6.8
2410 Female, age 72, unknown 6.8
1915 Female, age 42, unknown 6.7
2218 Male, age 76, both hemispheres 6.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.9
Samples: 139

Max nTPM: 31.2
Min nTPM: 8.5
Std nTPM: 4.1
Median nTPM: 16.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 31.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 27.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 27.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 27.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 27.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 25.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 24.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.9
FF:10158-103A5 76 years, female 53.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.2
Sample A Female 11.8
Sample B Female 11.2
Sample C Male 13.9
Sample D Male 13.2
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 13.0
Min nTPM: 9.8
Sample B Female 11.5
Sample C Male 13.0
Sample D Male 9.8
Substantia nigra
nTPM: 11.1
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.9
Sample A Female 12.7
Sample B Female 10.3
Sample C Male 11.3
Sample D Male 9.9
Superior colliculi
nTPM: 12.1
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.9
Sample A Female 13.4
Sample B Female 10.9
Sample C Male 11.6
Sample D Male 12.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.9
Sample A Male 12.9
Sample B Male 15.3
Sample C Female 14.1
Sample D Female 13.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
678719 Antisense, RP_040914_02_H03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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