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CIZ1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:43.4 nTPM
FANTOM5:112.9 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:17.4 nTPM
Allen mouse:6.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020387
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.4
2289 Male, age 61, right hemisphere 37.2
1781 Male, age 74, unknown 35.5
2846 Female, age 79, unknown 35.4
2290 Female, age 72, unknown 34.5
2288 Male, age 75, left hemisphere 32.0
1854 Male, age 80, left hemisphere 31.7
1857 Female, age 85, left hemisphere 31.3
2481 Female, age 94, left hemisphere 29.2
Claustrum
nTPM: 37.1
2196 Female, age 79, unknown 39.9
2292 Female, age 85, both hemispheres 39.6
2568 Male, age 61, both hemispheres 39.2
1956 Male, age 74, unknown 39.1
2284 Female, age 91, both hemispheres 38.3
2645 Female, age 72, unknown 37.8
2491 Male, age 75, both hemispheres 37.1
2198 Male, age 80, both hemispheres 36.7
2392 Female, age 94, both hemispheres 26.6
Globus pallidus, externus
nTPM: 32.6
2646 Male, age 61, right hemisphere 42.1
2567 Female, age 72, unknown 37.7
2772 Female, age 79, unknown 29.4
1996 Male, age 80, right hemisphere 28.1
2395 Male, age 75, both hemispheres 25.6
Globus pallidus, internus
nTPM: 29.7
2566 Female, age 72, unknown 35.2
2483 Female, age 94, right hemisphere 30.8
2111 Female, age 85, right hemisphere 30.3
2287 Male, age 75, right hemisphere 29.2
1818 Male, age 74, unknown 29.0
2778 Female, age 91, both hemispheres 26.9
2037 Male, age 80, right hemisphere 26.8
Nucleus accumbens
nTPM: 32.1
2698 Female, age 72, unknown 38.5
1783 Male, age 74, unknown 36.7
1806 Female, age 85, left hemisphere 31.3
1856 Female, age 91, right hemisphere 30.3
2286 Male, age 75, left hemisphere 30.3
2391 Female, age 94, left hemisphere 30.3
2824 Male, age 61, right hemisphere 30.0
2732 Male, age 80, right hemisphere 29.0
Nucleus basalis of Meynert
nTPM: 34.7
2569 Male, age 61, both hemispheres 43.6
2821 Male, age 75, both hemispheres 33.9
2484 Female, age 94, left hemisphere 33.0
2393 Male, age 80, right hemisphere 28.4
Nucleus of the diagonal band
nTPM: 32.3
2195 Female, age 85, both hemispheres 38.1
1979 Male, age 74, unknown 32.3
2775 Male, age 80, right hemisphere 32.0
2029 Male, age 61, right hemisphere 30.5
1812 Female, age 91, both hemispheres 28.4
Olfactory tubercle
nTPM: 34.0
2856 Male, age 75, right hemisphere 38.1
2487 Female, age 94, left hemisphere 33.3
1998 Female, age 91, both hemispheres 32.4
1846 Male, age 80, right hemisphere 32.0
Putamen
nTPM: 34.2
2647 Male, age 75, left hemisphere 41.1
2489 Female, age 72, unknown 40.0
1829 Male, age 74, unknown 35.1
2482 Female, age 94, left hemisphere 33.7
1838 Male, age 80, right hemisphere 31.2
2466 Female, age 79, unknown 29.3
1937 Female, age 91, right hemisphere 29.0
Septal nuclei
nTPM: 31.0
2629 Female, age 94, right hemisphere 38.9
1960 Male, age 74, unknown 34.7
2059 Female, age 85, both hemispheres 30.5
2199 Male, age 80, right hemisphere 29.9
2009 Female, age 91, both hemispheres 27.8
2031 Female, age 72, unknown 27.7
2394 Male, age 61, left hemisphere 27.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.1
Samples: 246

Max nTPM: 54.7
Min nTPM: 21.5
Std nTPM: 5.5
Median nTPM: 39.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 54.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 54.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 53.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 53.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 50.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 50.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 49.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 49.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 49.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 49.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 49.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.3
Samples: 246

Max nTPM: 54.2
Min nTPM: 24.3
Std nTPM: 5.6
Median nTPM: 40.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 54.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 54.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 53.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 53.3
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 52.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 51.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 51.0
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 50.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 50.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 50.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 50.4
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Brain - Putamen (basal ganglia)
Average nTPM: 43.4
Samples: 205

Max nTPM: 71.3
Min nTPM: 24.6
Std nTPM: 6.6
Median nTPM: 42.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 71.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 68.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 62.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 61.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 61.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 58.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 56.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 55.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 55.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 55.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 55.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 107.0
FF:10164-103B2 76 years, female 107.0
Globus pallidus
Scaled Tags Per Million: 112.9
FF:10161-103A8 76 years, female 128.1
FF:10175-103C4 60 years, female 97.8
Nucleus accumbens
Scaled Tags Per Million: 81.7
FF:10037-101F1 23-56 years, mixed 81.7
Putamen
Scaled Tags Per Million: 94.3
FF:10176-103C5 60 years, female 94.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Caudate
nTPM: 15.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 15.5
Sample C Male 18.3
Sample D Male 15.1
Putamen
nTPM: 14.7
Samples: 4

Max nTPM: 18.6
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 14.1
Sample C Male 15.8
Sample D Male 18.6
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.4
Sample A Female 9.8
Sample B Female 10.0
Sample C Male 8.4
Sample D Male 8.8
Ventral pallidum
nTPM: 11.6
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.8
Sample A Female 11.2
Sample B Female 10.8
Sample C Male 11.1
Sample D Male 13.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.8
Samples: 4

Max nTPM: 18.4
Min nTPM: 12.6
Sample A Male 18.4
Sample B Male 15.1
Sample C Female 12.6
Sample D Female 13.1
Septum
nTPM: 12.2
Samples: 4

Max nTPM: 16.5
Min nTPM: 9.6
Sample A Male 13.0
Sample B Male 9.7
Sample C Female 9.6
Sample D Female 16.5
Ventral forebrain
nTPM: 17.4
Samples: 4

Max nTPM: 19.7
Min nTPM: 14.8
Sample A Male 19.6
Sample B Male 15.6
Sample C Female 14.8
Sample D Female 19.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.9
583870 Antisense, RP_040831_01_C10, Mouse strain C57BL/6J (56 days, male) 6.9
Pallidum
Expression energy: 6.5
583870 Antisense, RP_040831_01_C10, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.