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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:100.0 nTPM
HPA:100.0 nTPM
GTEx:52.0 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:52.1 nTPM
Allen mouse:2.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047924Antibody HPA052962
Glial cells MediumMedium
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 100.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.5
2481 Female, age 94, left hemisphere 73.2
2288 Male, age 75, left hemisphere 61.1
2290 Female, age 72, unknown 59.8
1854 Male, age 80, left hemisphere 58.8
1857 Female, age 85, left hemisphere 57.3
2289 Male, age 61, right hemisphere 55.4
1781 Male, age 74, unknown 47.1
2846 Female, age 79, unknown 39.6
Claustrum
nTPM: 44.8
2645 Female, age 72, unknown 48.9
2491 Male, age 75, both hemispheres 47.1
2568 Male, age 61, both hemispheres 46.3
2284 Female, age 91, both hemispheres 46.2
2292 Female, age 85, both hemispheres 45.9
2198 Male, age 80, both hemispheres 45.4
2196 Female, age 79, unknown 42.8
1956 Male, age 74, unknown 40.8
2392 Female, age 94, both hemispheres 39.4
Globus pallidus, externus
nTPM: 100.0
2567 Female, age 72, unknown 130.1
1996 Male, age 80, right hemisphere 110.8
2646 Male, age 61, right hemisphere 102.7
2772 Female, age 79, unknown 94.0
2395 Male, age 75, both hemispheres 62.6
Globus pallidus, internus
nTPM: 93.2
2111 Female, age 85, right hemisphere 112.5
1818 Male, age 74, unknown 106.0
2566 Female, age 72, unknown 100.3
2037 Male, age 80, right hemisphere 98.5
2483 Female, age 94, right hemisphere 84.4
2778 Female, age 91, both hemispheres 78.4
2287 Male, age 75, right hemisphere 72.3
Nucleus accumbens
nTPM: 51.5
2286 Male, age 75, left hemisphere 66.1
1806 Female, age 85, left hemisphere 59.0
2732 Male, age 80, right hemisphere 54.6
2698 Female, age 72, unknown 52.7
2391 Female, age 94, left hemisphere 52.3
1783 Male, age 74, unknown 49.5
2824 Male, age 61, right hemisphere 43.5
1856 Female, age 91, right hemisphere 34.1
Nucleus basalis of Meynert
nTPM: 60.5
2569 Male, age 61, both hemispheres 106.6
2484 Female, age 94, left hemisphere 50.0
2393 Male, age 80, right hemisphere 46.2
2821 Male, age 75, both hemispheres 39.4
Nucleus of the diagonal band
nTPM: 40.2
1979 Male, age 74, unknown 45.8
1812 Female, age 91, both hemispheres 41.7
2029 Male, age 61, right hemisphere 40.8
2775 Male, age 80, right hemisphere 38.1
2195 Female, age 85, both hemispheres 34.4
Olfactory tubercle
nTPM: 44.3
2856 Male, age 75, right hemisphere 59.6
1846 Male, age 80, right hemisphere 46.6
2487 Female, age 94, left hemisphere 38.4
1998 Female, age 91, both hemispheres 32.6
Putamen
nTPM: 57.1
2647 Male, age 75, left hemisphere 105.1
2482 Female, age 94, left hemisphere 61.2
2489 Female, age 72, unknown 58.8
1829 Male, age 74, unknown 58.3
1937 Female, age 91, right hemisphere 39.8
2466 Female, age 79, unknown 38.4
1838 Male, age 80, right hemisphere 37.8
Septal nuclei
nTPM: 46.6
2394 Male, age 61, left hemisphere 73.0
2199 Male, age 80, right hemisphere 60.8
2059 Female, age 85, both hemispheres 54.2
1960 Male, age 74, unknown 36.7
2031 Female, age 72, unknown 34.6
2629 Female, age 94, right hemisphere 33.8
2009 Female, age 91, both hemispheres 32.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.0
Samples: 246

Max nTPM: 167.1
Min nTPM: 13.5
Std nTPM: 19.8
Median nTPM: 49.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 167.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 128.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 111.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 106.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 105.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 100.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 97.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 96.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 95.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 94.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 93.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.9
Samples: 246

Max nTPM: 104.8
Min nTPM: 16.6
Std nTPM: 16.2
Median nTPM: 40.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 104.8
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 90.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 88.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 87.1
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 84.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 83.4
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 83.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 81.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 79.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 77.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 77.7
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Brain - Putamen (basal ganglia)
Average nTPM: 49.7
Samples: 205

Max nTPM: 96.9
Min nTPM: 14.7
Std nTPM: 17.2
Median nTPM: 48.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 96.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 94.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 90.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 89.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 86.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 86.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 83.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 82.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 81.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 81.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 81.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.1
FF:10164-103B2 76 years, female 23.1
Globus pallidus
Scaled Tags Per Million: 29.9
FF:10161-103A8 76 years, female 36.1
FF:10175-103C4 60 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 21.4
FF:10037-101F1 23-56 years, mixed 21.4
Putamen
Scaled Tags Per Million: 21.9
FF:10176-103C5 60 years, female 21.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.9
Pig sample Sample description nTPM
Caudate
nTPM: 27.5
Samples: 4

Max nTPM: 32.2
Min nTPM: 19.6
Sample A Female 19.6
Sample B Female 30.4
Sample C Male 32.2
Sample D Male 27.7
Putamen
nTPM: 35.9
Samples: 4

Max nTPM: 42.1
Min nTPM: 30.1
Sample A Female 42.1
Sample B Female 30.1
Sample C Male 35.7
Sample D Male 35.6
Septum
nTPM: 27.7
Samples: 4

Max nTPM: 34.8
Min nTPM: 22.7
Sample A Female 25.6
Sample B Female 27.7
Sample C Male 34.8
Sample D Male 22.7
Ventral pallidum
nTPM: 34.9
Samples: 4

Max nTPM: 61.1
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 30.6
Sample C Male 61.1
Sample D Male 28.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 52.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.5
Samples: 4

Max nTPM: 41.5
Min nTPM: 38.0
Sample A Male 39.2
Sample B Male 41.5
Sample C Female 39.3
Sample D Female 38.0
Septum
nTPM: 39.4
Samples: 4

Max nTPM: 41.4
Min nTPM: 38.1
Sample A Male 38.9
Sample B Male 39.0
Sample C Female 38.1
Sample D Female 41.4
Ventral forebrain
nTPM: 52.1
Samples: 4

Max nTPM: 55.0
Min nTPM: 48.3
Sample A Male 55.0
Sample B Male 54.7
Sample C Female 48.3
Sample D Female 50.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
671260 Antisense, RP_040914_02_C11, Mouse strain C57BL/6J (56 days, male) 1.3
70743871 Antisense, RP_050725_01_G11, Mouse strain C57BL/6J (56 days, male) 1.0
77910763 Antisense, RP_070208_04_G01, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 2.3
671260 Antisense, RP_040914_02_C11, Mouse strain C57BL/6J (56 days, male) 2.9
70743871 Antisense, RP_050725_01_G11, Mouse strain C57BL/6J (56 days, male) 2.6
77910763 Antisense, RP_070208_04_G01, Mouse strain C57BL/6J (56 days, male) 1.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.