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MSRB2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.9 nTPM
HPA:30.9 nTPM
GTEx:23.6 nTPM
FANTOM5:25.6 Scaled Tags Per Million
Pig:18.5 nTPM
Mouse:27.4 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
1833 Male, age 53, unknown 29.8
1827 Male, age 72, unknown 29.4
1870 Female, age 42, unknown 29.3
2219 Male, age 76, both hemispheres 29.1
2586 Male, age 75, left hemisphere 29.1
2411 Female, age 72, unknown 28.8
1830 Male, age 51, unknown 28.3
2828 Female, age 72, unknown 28.1
2019 Male, age 18, unknown 27.9
2666 Male, age 74, left hemisphere 27.6
Dorsal raphe nucleus
nTPM: 29.0
2047 Male, age 72, unknown 29.8
1828 Male, age 53, unknown 29.5
2750 Male, age 76, both hemispheres 29.5
2298 Female, age 72, unknown 28.4
2016 Female, age 72, unknown 27.7
Inferior colliculus
nTPM: 30.9
2849 Male, age 72, unknown 31.6
1848 Female, age 42, unknown 31.0
2097 Female, age 72, unknown 30.5
1890 Male, age 53, unknown 30.4
Median raphe nucleus
nTPM: 29.7
2220 Male, age 76, midline 29.7
Pedunculopontine tegmental nucleus
nTPM: 29.6
2334 Male, age 80, both hemispheres 30.5
1921 Female, age 85, both hemispheres 29.8
2338 Male, age 61, both hemispheres 28.5
Periaquaductal grey, anterior
nTPM: 28.4
1947 Male, age 18, unknown 29.1
1795 Male, age 51, unknown 28.6
2502 Female, age 75, unknown 27.5
Periaquaductal grey, dorsal
nTPM: 29.3
2850 Male, age 76, both hemispheres 30.0
1840 Male, age 53, unknown 29.9
2464 Female, age 72, unknown 29.3
1831 Male, age 72, unknown 27.9
Periaquaductal grey, lateral
nTPM: 28.2
2140 Male, age 76, both hemispheres 29.1
2053 Male, age 18, unknown 28.6
2272 Male, age 74, both hemispheres 26.9
Pretectal area
nTPM: 29.1
1817 Female, age 42, unknown 30.3
2316 Male, age 76, right hemisphere 30.0
1816 Male, age 51, unknown 29.9
1944 Female, age 72, unknown 29.7
2007 Male, age 72, unknown 29.4
1815 Male, age 53, unknown 29.1
2224 Female, age 72, unknown 29.0
2667 Female, age 75, unknown 28.9
2825 Male, age 18, unknown 28.9
2407 Male, age 75, both hemispheres 27.8
2273 Male, age 74, both hemispheres 27.3
Red nucleus
nTPM: 28.8
2725 Female, age 75, unknown 30.6
1821 Female, age 72, unknown 30.0
2823 Male, age 76, right hemisphere 29.3
2785 Male, age 18, unknown 29.1
2503 Female, age 72, unknown 28.9
2227 Male, age 72, unknown 28.5
2769 Male, age 72, unknown 28.5
1904 Male, age 53, unknown 28.3
1865 Male, age 51, unknown 28.2
2584 Male, age 75, left hemisphere 28.1
2588 Male, age 74, left hemisphere 28.1
1954 Female, age 42, unknown 28.0
Substantia nigra
nTPM: 29.4
2241 Male, age 72, unknown 30.9
1916 Female, age 42, unknown 30.8
2409 Female, age 72, unknown 30.2
2665 Male, age 74, both hemispheres 30.2
1889 Female, age 72, unknown 29.7
1851 Male, age 51, unknown 29.4
2699 Male, age 18, unknown 28.9
1941 Male, age 53, unknown 28.7
2590 Female, age 75, unknown 27.9
2583 Male, age 75, right hemisphere 27.6
Superior colliculus
nTPM: 28.5
1895 Male, age 76, right hemisphere 30.9
2668 Female, age 75, unknown 29.4
1839 Male, age 51, unknown 28.9
2087 Female, age 72, unknown 28.9
2587 Male, age 74, left hemisphere 28.5
2261 Male, age 18, unknown 28.3
1796 Male, age 53, unknown 28.1
2664 Male, age 75, both hemispheres 28.0
1913 Female, age 42, unknown 26.8
1995 Male, age 72, unknown 26.8
Ventral tegmental area
nTPM: 29.1
1915 Female, age 42, unknown 30.0
2218 Male, age 76, both hemispheres 29.4
2410 Female, age 72, unknown 29.3
2021 Male, age 53, unknown 28.9
1942 Male, age 51, unknown 28.7
2223 Female, age 72, unknown 28.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 139

Max nTPM: 44.1
Min nTPM: 11.2
Std nTPM: 5.8
Median nTPM: 22.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 44.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 40.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 40.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 36.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 35.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 35.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 34.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 33.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 33.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 33.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.6
FF:10158-103A5 76 years, female 25.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.5
Pig sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 31.0
Min nTPM: 10.6
Sample A Female 31.0
Sample B Female 10.6
Sample C Male 12.4
Sample D Male 20.1
Periaqueductal gray
nTPM: 15.2
Samples: 3

Max nTPM: 19.1
Min nTPM: 12.4
Sample B Female 12.4
Sample C Male 14.2
Sample D Male 19.1
Substantia nigra
nTPM: 16.7
Samples: 4

Max nTPM: 26.0
Min nTPM: 11.3
Sample A Female 26.0
Sample B Female 11.3
Sample C Male 11.4
Sample D Male 18.0
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 26.5
Min nTPM: 10.8
Sample A Female 26.5
Sample B Female 12.3
Sample C Male 10.8
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 30.5
Min nTPM: 25.9
Sample A Male 27.2
Sample B Male 25.9
Sample C Female 26.1
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
76135795 Antisense, RP_060530_02_G08, Mouse strain C57BL/6J (56 days, male) 1.7
79360298 Antisense, RP_071018_01_H04, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.