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PARD3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.1 nTPM
HPA:22.1 nTPM
GTEx:8.4 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:12.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.0
1833 Male, age 53, unknown 14.9
2586 Male, age 75, left hemisphere 14.8
1827 Male, age 72, unknown 14.7
2828 Female, age 72, unknown 14.7
1870 Female, age 42, unknown 14.2
2411 Female, age 72, unknown 13.2
1830 Male, age 51, unknown 12.5
2666 Male, age 74, left hemisphere 10.9
2219 Male, age 76, both hemispheres 10.7
2019 Male, age 18, unknown 9.7
Dorsal raphe nucleus
nTPM: 14.8
2016 Female, age 72, unknown 17.8
2298 Female, age 72, unknown 16.9
1828 Male, age 53, unknown 15.0
2047 Male, age 72, unknown 12.5
2750 Male, age 76, both hemispheres 12.0
Inferior colliculus
nTPM: 18.9
1890 Male, age 53, unknown 20.5
2849 Male, age 72, unknown 20.5
1848 Female, age 42, unknown 19.7
2097 Female, age 72, unknown 14.9
Median raphe nucleus
nTPM: 10.6
2220 Male, age 76, midline 10.6
Pedunculopontine tegmental nucleus
nTPM: 12.7
1921 Female, age 85, both hemispheres 13.7
2334 Male, age 80, both hemispheres 13.6
2338 Male, age 61, both hemispheres 10.7
Periaquaductal grey, anterior
nTPM: 14.5
1795 Male, age 51, unknown 16.1
1947 Male, age 18, unknown 15.0
2502 Female, age 75, unknown 12.3
Periaquaductal grey, dorsal
nTPM: 22.1
2850 Male, age 76, both hemispheres 25.2
1831 Male, age 72, unknown 23.9
1840 Male, age 53, unknown 22.4
2464 Female, age 72, unknown 17.1
Periaquaductal grey, lateral
nTPM: 19.4
2140 Male, age 76, both hemispheres 24.8
2053 Male, age 18, unknown 17.5
2272 Male, age 74, both hemispheres 15.8
Pretectal area
nTPM: 16.0
2224 Female, age 72, unknown 17.7
2273 Male, age 74, both hemispheres 17.7
2316 Male, age 76, right hemisphere 17.7
1815 Male, age 53, unknown 17.1
2667 Female, age 75, unknown 16.7
1817 Female, age 42, unknown 16.3
1944 Female, age 72, unknown 16.0
2825 Male, age 18, unknown 15.8
1816 Male, age 51, unknown 14.7
2007 Male, age 72, unknown 14.4
2407 Male, age 75, both hemispheres 12.1
Red nucleus
nTPM: 10.4
2588 Male, age 74, left hemisphere 13.2
2503 Female, age 72, unknown 12.5
2725 Female, age 75, unknown 11.6
2785 Male, age 18, unknown 11.1
2769 Male, age 72, unknown 10.5
2227 Male, age 72, unknown 10.3
1821 Female, age 72, unknown 9.7
1954 Female, age 42, unknown 9.6
1904 Male, age 53, unknown 9.5
2823 Male, age 76, right hemisphere 9.4
2584 Male, age 75, left hemisphere 9.1
1865 Male, age 51, unknown 8.7
Substantia nigra
nTPM: 14.5
2699 Male, age 18, unknown 17.8
2665 Male, age 74, both hemispheres 16.1
1916 Female, age 42, unknown 16.0
1851 Male, age 51, unknown 15.5
2409 Female, age 72, unknown 15.5
2590 Female, age 75, unknown 15.2
1889 Female, age 72, unknown 14.2
2241 Male, age 72, unknown 13.4
2583 Male, age 75, right hemisphere 11.8
1941 Male, age 53, unknown 9.5
Superior colliculus
nTPM: 14.4
1839 Male, age 51, unknown 16.7
1895 Male, age 76, right hemisphere 16.4
2261 Male, age 18, unknown 15.0
2087 Female, age 72, unknown 14.7
1796 Male, age 53, unknown 14.5
1995 Male, age 72, unknown 14.5
2587 Male, age 74, left hemisphere 13.8
2664 Male, age 75, both hemispheres 13.8
2668 Female, age 75, unknown 13.4
1913 Female, age 42, unknown 11.0
Ventral tegmental area
nTPM: 12.8
1915 Female, age 42, unknown 15.6
2021 Male, age 53, unknown 14.2
2410 Female, age 72, unknown 12.5
2218 Male, age 76, both hemispheres 12.4
1942 Male, age 51, unknown 11.8
2223 Female, age 72, unknown 10.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 27.5
Min nTPM: 2.3
Std nTPM: 4.1
Median nTPM: 7.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 27.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 14.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 14.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 14.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 14.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 14.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 14.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.1
FF:10158-103A5 76 years, female 25.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 30.0
Min nTPM: 17.8
Sample A Female 30.0
Sample B Female 29.6
Sample C Male 18.4
Sample D Male 17.8
Periaqueductal gray
nTPM: 27.3
Samples: 3

Max nTPM: 29.1
Min nTPM: 26.1
Sample B Female 29.1
Sample C Male 26.1
Sample D Male 26.8
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 30.5
Min nTPM: 21.9
Sample A Female 23.3
Sample B Female 26.5
Sample C Male 21.9
Sample D Male 30.5
Superior colliculi
nTPM: 25.6
Samples: 4

Max nTPM: 31.3
Min nTPM: 19.8
Sample A Female 24.0
Sample B Female 31.3
Sample C Male 19.8
Sample D Male 27.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.8
Sample A Male 11.8
Sample B Male 13.0
Sample C Female 14.1
Sample D Female 12.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71234741 Antisense, RP_050505_03_F07, Mouse strain C57BL/6J (56 days, male) 0.2
73992915 Antisense, RP_051214_01_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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