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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:19.5 nTPM
FANTOM5:46.5 Scaled Tags Per Million
Pig:32.1 nTPM
Mouse:32.7 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.2
2666 Male, age 74, left hemisphere 18.1
2828 Female, age 72, unknown 17.9
2219 Male, age 76, both hemispheres 17.2
1827 Male, age 72, unknown 16.2
1870 Female, age 42, unknown 14.2
1833 Male, age 53, unknown 13.2
2019 Male, age 18, unknown 12.4
1830 Male, age 51, unknown 11.4
2586 Male, age 75, left hemisphere 11.1
2411 Female, age 72, unknown 10.8
Dorsal raphe nucleus
nTPM: 14.8
2016 Female, age 72, unknown 15.8
1828 Male, age 53, unknown 15.1
2047 Male, age 72, unknown 15.1
2298 Female, age 72, unknown 14.2
2750 Male, age 76, both hemispheres 13.9
Inferior colliculus
nTPM: 14.6
2849 Male, age 72, unknown 15.9
1848 Female, age 42, unknown 14.6
2097 Female, age 72, unknown 14.3
1890 Male, age 53, unknown 13.6
Median raphe nucleus
nTPM: 18.4
2220 Male, age 76, midline 18.4
Pedunculopontine tegmental nucleus
nTPM: 15.2
2334 Male, age 80, both hemispheres 17.4
2338 Male, age 61, both hemispheres 14.5
1921 Female, age 85, both hemispheres 13.8
Periaquaductal grey, anterior
nTPM: 18.1
2502 Female, age 75, unknown 18.8
1795 Male, age 51, unknown 17.9
1947 Male, age 18, unknown 17.6
Periaquaductal grey, dorsal
nTPM: 19.2
2850 Male, age 76, both hemispheres 23.5
1840 Male, age 53, unknown 21.0
1831 Male, age 72, unknown 17.6
2464 Female, age 72, unknown 14.8
Periaquaductal grey, lateral
nTPM: 17.9
2140 Male, age 76, both hemispheres 19.5
2053 Male, age 18, unknown 17.7
2272 Male, age 74, both hemispheres 16.4
Pretectal area
nTPM: 18.3
1816 Male, age 51, unknown 22.4
2667 Female, age 75, unknown 20.0
1944 Female, age 72, unknown 19.9
1815 Male, age 53, unknown 19.7
1817 Female, age 42, unknown 18.2
2273 Male, age 74, both hemispheres 18.2
2224 Female, age 72, unknown 17.2
2316 Male, age 76, right hemisphere 16.7
2825 Male, age 18, unknown 16.5
2407 Male, age 75, both hemispheres 16.4
2007 Male, age 72, unknown 16.1
Red nucleus
nTPM: 12.2
2503 Female, age 72, unknown 15.8
2725 Female, age 75, unknown 13.7
1821 Female, age 72, unknown 13.2
2584 Male, age 75, left hemisphere 12.0
1954 Female, age 42, unknown 11.6
2769 Male, age 72, unknown 11.6
1865 Male, age 51, unknown 11.5
2227 Male, age 72, unknown 11.5
2785 Male, age 18, unknown 11.5
2823 Male, age 76, right hemisphere 11.5
1904 Male, age 53, unknown 11.4
2588 Male, age 74, left hemisphere 11.1
Substantia nigra
nTPM: 15.5
2699 Male, age 18, unknown 19.3
2665 Male, age 74, both hemispheres 17.2
2409 Female, age 72, unknown 16.9
1916 Female, age 42, unknown 16.4
1851 Male, age 51, unknown 15.5
1889 Female, age 72, unknown 15.4
2241 Male, age 72, unknown 15.4
1941 Male, age 53, unknown 14.4
2590 Female, age 75, unknown 12.2
2583 Male, age 75, right hemisphere 12.1
Superior colliculus
nTPM: 16.0
2087 Female, age 72, unknown 17.5
2587 Male, age 74, left hemisphere 17.4
2261 Male, age 18, unknown 17.2
1995 Male, age 72, unknown 16.7
1796 Male, age 53, unknown 16.1
2664 Male, age 75, both hemispheres 15.9
1839 Male, age 51, unknown 15.6
2668 Female, age 75, unknown 15.6
1913 Female, age 42, unknown 15.3
1895 Male, age 76, right hemisphere 13.1
Ventral tegmental area
nTPM: 15.5
2218 Male, age 76, both hemispheres 18.6
1942 Male, age 51, unknown 16.5
2021 Male, age 53, unknown 16.2
1915 Female, age 42, unknown 14.9
2223 Female, age 72, unknown 14.5
2410 Female, age 72, unknown 12.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.5
Samples: 139

Max nTPM: 37.9
Min nTPM: 8.9
Std nTPM: 5.6
Median nTPM: 18.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 37.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 36.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 34.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 33.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 33.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 32.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 30.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 30.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 30.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 29.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 28.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.5
FF:10158-103A5 76 years, female 46.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.1
Pig sample Sample description nTPM
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 36.6
Min nTPM: 27.5
Sample A Female 36.6
Sample B Female 27.5
Sample C Male 33.2
Sample D Male 30.1
Periaqueductal gray
nTPM: 29.5
Samples: 3

Max nTPM: 33.3
Min nTPM: 26.9
Sample B Female 26.9
Sample C Male 33.3
Sample D Male 28.4
Substantia nigra
nTPM: 32.1
Samples: 4

Max nTPM: 35.1
Min nTPM: 29.2
Sample A Female 30.2
Sample B Female 35.1
Sample C Male 33.9
Sample D Male 29.2
Superior colliculi
nTPM: 30.1
Samples: 4

Max nTPM: 33.1
Min nTPM: 27.3
Sample A Female 29.4
Sample B Female 27.3
Sample C Male 30.6
Sample D Male 33.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 34.9
Min nTPM: 30.1
Sample A Male 32.2
Sample B Male 33.7
Sample C Female 34.9
Sample D Female 30.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
71380441 Antisense, RP_050407_04_F10, Mouse strain C57BL/6J (56 days, male) 5.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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