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FAM13C
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:45.8 nTPM
HPA:45.8 nTPM
GTEx:15.7 nTPM
FANTOM5:103.3 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:38.7 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037888
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.4
2288 Male, age 75, left hemisphere 27.5
1854 Male, age 80, left hemisphere 14.4
2846 Female, age 79, unknown 12.9
1781 Male, age 74, unknown 11.9
2481 Female, age 94, left hemisphere 11.7
2290 Female, age 72, unknown 11.6
2289 Male, age 61, right hemisphere 9.7
1857 Female, age 85, left hemisphere 7.1
Claustrum
nTPM: 25.2
1956 Male, age 74, unknown 39.3
2292 Female, age 85, both hemispheres 38.5
2196 Female, age 79, unknown 29.0
2392 Female, age 94, both hemispheres 26.4
2568 Male, age 61, both hemispheres 20.9
2491 Male, age 75, both hemispheres 20.0
2198 Male, age 80, both hemispheres 19.5
2284 Female, age 91, both hemispheres 17.8
2645 Female, age 72, unknown 15.8
Globus pallidus, externus
nTPM: 40.2
2567 Female, age 72, unknown 45.5
1996 Male, age 80, right hemisphere 45.1
2646 Male, age 61, right hemisphere 39.0
2772 Female, age 79, unknown 39.0
2395 Male, age 75, both hemispheres 32.6
Globus pallidus, internus
nTPM: 45.8
2111 Female, age 85, right hemisphere 58.4
2778 Female, age 91, both hemispheres 52.9
2287 Male, age 75, right hemisphere 49.8
2566 Female, age 72, unknown 47.7
2037 Male, age 80, right hemisphere 44.3
1818 Male, age 74, unknown 43.1
2483 Female, age 94, right hemisphere 24.7
Nucleus accumbens
nTPM: 20.9
2391 Female, age 94, left hemisphere 32.0
2698 Female, age 72, unknown 29.0
2732 Male, age 80, right hemisphere 24.8
2286 Male, age 75, left hemisphere 24.4
2824 Male, age 61, right hemisphere 20.5
1806 Female, age 85, left hemisphere 14.4
1783 Male, age 74, unknown 12.4
1856 Female, age 91, right hemisphere 9.4
Nucleus basalis of Meynert
nTPM: 22.0
2569 Male, age 61, both hemispheres 32.3
2821 Male, age 75, both hemispheres 26.3
2393 Male, age 80, right hemisphere 15.4
2484 Female, age 94, left hemisphere 13.8
Nucleus of the diagonal band
nTPM: 18.2
2029 Male, age 61, right hemisphere 28.6
1812 Female, age 91, both hemispheres 17.1
1979 Male, age 74, unknown 15.9
2775 Male, age 80, right hemisphere 15.5
2195 Female, age 85, both hemispheres 14.1
Olfactory tubercle
nTPM: 18.1
2487 Female, age 94, left hemisphere 20.5
2856 Male, age 75, right hemisphere 18.7
1998 Female, age 91, both hemispheres 16.7
1846 Male, age 80, right hemisphere 16.5
Putamen
nTPM: 17.0
2647 Male, age 75, left hemisphere 25.0
2482 Female, age 94, left hemisphere 21.4
1829 Male, age 74, unknown 19.2
2489 Female, age 72, unknown 17.9
1937 Female, age 91, right hemisphere 15.1
2466 Female, age 79, unknown 11.1
1838 Male, age 80, right hemisphere 9.5
Septal nuclei
nTPM: 18.1
2394 Male, age 61, left hemisphere 26.6
2629 Female, age 94, right hemisphere 24.0
2199 Male, age 80, right hemisphere 19.3
2059 Female, age 85, both hemispheres 16.9
2009 Female, age 91, both hemispheres 14.7
2031 Female, age 72, unknown 13.0
1960 Male, age 74, unknown 12.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.2
Samples: 246

Max nTPM: 32.3
Min nTPM: 3.9
Std nTPM: 4.6
Median nTPM: 12.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 32.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 30.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 29.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 27.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 27.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 24.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 24.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 24.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 24.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 23.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 23.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.8
Samples: 246

Max nTPM: 70.7
Min nTPM: 4.1
Std nTPM: 6.0
Median nTPM: 10.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 70.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 39.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 36.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 32.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 29.1
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 26.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 24.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 23.3
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 22.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 22.4
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 21.9
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Brain - Putamen (basal ganglia)
Average nTPM: 15.7
Samples: 205

Max nTPM: 59.5
Min nTPM: 5.3
Std nTPM: 6.2
Median nTPM: 14.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 59.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 41.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 30.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 30.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 30.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 27.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 27.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 27.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 26.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 26.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 26.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.1
FF:10164-103B2 76 years, female 66.1
Globus pallidus
Scaled Tags Per Million: 103.3
FF:10161-103A8 76 years, female 108.7
FF:10175-103C4 60 years, female 97.8
Nucleus accumbens
Scaled Tags Per Million: 86.6
FF:10037-101F1 23-56 years, mixed 86.6
Putamen
Scaled Tags Per Million: 43.8
FF:10176-103C5 60 years, female 43.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Caudate
nTPM: 16.9
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.9
Sample A Female 17.9
Sample B Female 15.9
Sample C Male 17.2
Sample D Male 16.5
Putamen
nTPM: 20.7
Samples: 4

Max nTPM: 26.8
Min nTPM: 16.3
Sample A Female 21.2
Sample B Female 16.3
Sample C Male 26.8
Sample D Male 18.5
Septum
nTPM: 18.2
Samples: 4

Max nTPM: 22.5
Min nTPM: 13.6
Sample A Female 19.2
Sample B Female 17.5
Sample C Male 22.5
Sample D Male 13.6
Ventral pallidum
nTPM: 20.0
Samples: 4

Max nTPM: 23.5
Min nTPM: 16.7
Sample A Female 18.8
Sample B Female 20.9
Sample C Male 23.5
Sample D Male 16.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 29.4
Samples: 4

Max nTPM: 30.4
Min nTPM: 28.6
Sample A Male 29.1
Sample B Male 28.6
Sample C Female 30.4
Sample D Female 29.4
Septum
nTPM: 25.4
Samples: 4

Max nTPM: 28.5
Min nTPM: 23.5
Sample A Male 28.5
Sample B Male 25.2
Sample C Female 23.5
Sample D Female 24.3
Ventral forebrain
nTPM: 38.7
Samples: 4

Max nTPM: 44.3
Min nTPM: 32.8
Sample A Male 44.3
Sample B Male 37.3
Sample C Female 32.8
Sample D Female 40.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
72081756 Antisense, RP_051019_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
72081756 Antisense, RP_051019_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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