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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.8 nTPM
HPA:94.8 nTPM
GTEx:72.6 nTPM
FANTOM5:275.4 Scaled Tags Per Million
Pig:112.6 nTPM
Mouse:57.4 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.3
2828 Female, age 72, unknown 93.9
1870 Female, age 42, unknown 88.9
1827 Male, age 72, unknown 85.8
2586 Male, age 75, left hemisphere 84.6
1833 Male, age 53, unknown 82.8
1830 Male, age 51, unknown 82.4
2019 Male, age 18, unknown 81.3
2411 Female, age 72, unknown 79.4
2666 Male, age 74, left hemisphere 77.2
2219 Male, age 76, both hemispheres 77.1
Dorsal raphe nucleus
nTPM: 89.4
2016 Female, age 72, unknown 107.2
2298 Female, age 72, unknown 89.9
1828 Male, age 53, unknown 88.9
2047 Male, age 72, unknown 81.1
2750 Male, age 76, both hemispheres 79.7
Inferior colliculus
nTPM: 88.2
2097 Female, age 72, unknown 91.4
1848 Female, age 42, unknown 89.9
2849 Male, age 72, unknown 87.3
1890 Male, age 53, unknown 84.2
Median raphe nucleus
nTPM: 74.4
2220 Male, age 76, midline 74.4
Pedunculopontine tegmental nucleus
nTPM: 80.7
2334 Male, age 80, both hemispheres 81.7
1921 Female, age 85, both hemispheres 81.4
2338 Male, age 61, both hemispheres 79.0
Periaquaductal grey, anterior
nTPM: 86.1
1795 Male, age 51, unknown 87.4
1947 Male, age 18, unknown 86.2
2502 Female, age 75, unknown 84.7
Periaquaductal grey, dorsal
nTPM: 94.8
2850 Male, age 76, both hemispheres 99.8
1840 Male, age 53, unknown 96.8
1831 Male, age 72, unknown 93.9
2464 Female, age 72, unknown 88.7
Periaquaductal grey, lateral
nTPM: 89.7
2053 Male, age 18, unknown 94.9
2140 Male, age 76, both hemispheres 93.0
2272 Male, age 74, both hemispheres 81.2
Pretectal area
nTPM: 88.9
2273 Male, age 74, both hemispheres 101.6
1815 Male, age 53, unknown 92.7
2407 Male, age 75, both hemispheres 92.0
2224 Female, age 72, unknown 90.3
2316 Male, age 76, right hemisphere 90.2
1944 Female, age 72, unknown 89.7
2825 Male, age 18, unknown 86.1
1816 Male, age 51, unknown 85.8
2667 Female, age 75, unknown 85.8
1817 Female, age 42, unknown 85.6
2007 Male, age 72, unknown 78.3
Red nucleus
nTPM: 83.4
2503 Female, age 72, unknown 91.3
1904 Male, age 53, unknown 89.8
1954 Female, age 42, unknown 88.2
1821 Female, age 72, unknown 87.3
1865 Male, age 51, unknown 85.3
2769 Male, age 72, unknown 85.0
2227 Male, age 72, unknown 84.4
2823 Male, age 76, right hemisphere 83.9
2785 Male, age 18, unknown 81.5
2725 Female, age 75, unknown 80.1
2588 Male, age 74, left hemisphere 74.3
2584 Male, age 75, left hemisphere 69.4
Substantia nigra
nTPM: 85.1
2699 Male, age 18, unknown 96.1
2409 Female, age 72, unknown 92.0
2590 Female, age 75, unknown 90.6
1889 Female, age 72, unknown 88.0
2583 Male, age 75, right hemisphere 86.3
1851 Male, age 51, unknown 84.5
2241 Male, age 72, unknown 81.7
2665 Male, age 74, both hemispheres 81.1
1941 Male, age 53, unknown 77.6
1916 Female, age 42, unknown 73.5
Superior colliculus
nTPM: 93.8
1995 Male, age 72, unknown 115.7
1913 Female, age 42, unknown 103.5
2664 Male, age 75, both hemispheres 96.9
2668 Female, age 75, unknown 94.9
2587 Male, age 74, left hemisphere 94.5
2087 Female, age 72, unknown 90.6
1839 Male, age 51, unknown 89.6
1796 Male, age 53, unknown 85.8
1895 Male, age 76, right hemisphere 83.6
2261 Male, age 18, unknown 83.0
Ventral tegmental area
nTPM: 84.5
2021 Male, age 53, unknown 90.7
1942 Male, age 51, unknown 87.2
1915 Female, age 42, unknown 85.3
2223 Female, age 72, unknown 84.7
2410 Female, age 72, unknown 83.0
2218 Male, age 76, both hemispheres 76.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.6
Samples: 139

Max nTPM: 154.3
Min nTPM: 26.8
Std nTPM: 26.6
Median nTPM: 69.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 154.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 144.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 143.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 129.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 126.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 125.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 124.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 118.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 116.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 116.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 275.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 275.4
FF:10158-103A5 76 years, female 275.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.6
Pig sample Sample description nTPM
Midbrain
nTPM: 112.6
Samples: 4

Max nTPM: 159.4
Min nTPM: 79.5
Sample A Female 159.4
Sample B Female 101.9
Sample C Male 109.5
Sample D Male 79.5
Periaqueductal gray
nTPM: 89.8
Samples: 3

Max nTPM: 97.9
Min nTPM: 78.5
Sample B Female 93.1
Sample C Male 78.5
Sample D Male 97.9
Substantia nigra
nTPM: 96.0
Samples: 4

Max nTPM: 107.9
Min nTPM: 84.7
Sample A Female 102.6
Sample B Female 84.7
Sample C Male 88.9
Sample D Male 107.9
Superior colliculi
nTPM: 107.8
Samples: 4

Max nTPM: 121.5
Min nTPM: 99.1
Sample A Female 99.1
Sample B Female 121.5
Sample C Male 106.8
Sample D Male 103.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.4
Samples: 4

Max nTPM: 60.7
Min nTPM: 53.4
Sample A Male 60.7
Sample B Male 58.1
Sample C Female 57.2
Sample D Female 53.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
68795422 Antisense, RP_041122_02_E04, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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