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PPRC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA:11.4 nTPM
GTEx:7.6 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:7.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.8
2586 Male, age 75, left hemisphere 13.3
1833 Male, age 53, unknown 11.1
2666 Male, age 74, left hemisphere 11.1
1830 Male, age 51, unknown 10.9
2828 Female, age 72, unknown 10.7
1870 Female, age 42, unknown 10.6
2019 Male, age 18, unknown 10.6
1827 Male, age 72, unknown 10.4
2411 Female, age 72, unknown 10.3
2219 Male, age 76, both hemispheres 9.1
Dorsal raphe nucleus
nTPM: 9.9
2750 Male, age 76, both hemispheres 11.0
2047 Male, age 72, unknown 10.2
1828 Male, age 53, unknown 9.9
2016 Female, age 72, unknown 9.2
2298 Female, age 72, unknown 9.0
Inferior colliculus
nTPM: 10.0
2849 Male, age 72, unknown 10.9
1890 Male, age 53, unknown 10.2
1848 Female, age 42, unknown 9.9
2097 Female, age 72, unknown 9.1
Median raphe nucleus
nTPM: 11.4
2220 Male, age 76, midline 11.4
Pedunculopontine tegmental nucleus
nTPM: 10.2
2334 Male, age 80, both hemispheres 10.6
2338 Male, age 61, both hemispheres 10.0
1921 Female, age 85, both hemispheres 9.9
Periaquaductal grey, anterior
nTPM: 10.3
1947 Male, age 18, unknown 10.7
2502 Female, age 75, unknown 10.1
1795 Male, age 51, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 10.3
2850 Male, age 76, both hemispheres 12.1
1831 Male, age 72, unknown 9.8
1840 Male, age 53, unknown 9.8
2464 Female, age 72, unknown 9.5
Periaquaductal grey, lateral
nTPM: 10.5
2140 Male, age 76, both hemispheres 11.7
2053 Male, age 18, unknown 10.1
2272 Male, age 74, both hemispheres 9.8
Pretectal area
nTPM: 10.3
2407 Male, age 75, both hemispheres 11.6
2316 Male, age 76, right hemisphere 11.3
1815 Male, age 53, unknown 10.8
2007 Male, age 72, unknown 10.5
2825 Male, age 18, unknown 10.5
1817 Female, age 42, unknown 10.4
1816 Male, age 51, unknown 10.3
1944 Female, age 72, unknown 10.2
2224 Female, age 72, unknown 9.6
2667 Female, age 75, unknown 9.5
2273 Male, age 74, both hemispheres 8.8
Red nucleus
nTPM: 10.8
2584 Male, age 75, left hemisphere 12.6
2823 Male, age 76, right hemisphere 12.1
2588 Male, age 74, left hemisphere 11.0
2769 Male, age 72, unknown 10.9
2785 Male, age 18, unknown 10.9
2725 Female, age 75, unknown 10.8
1865 Male, age 51, unknown 10.6
1904 Male, age 53, unknown 10.6
2227 Male, age 72, unknown 10.6
1954 Female, age 42, unknown 10.0
1821 Female, age 72, unknown 9.9
2503 Female, age 72, unknown 9.6
Substantia nigra
nTPM: 10.4
2583 Male, age 75, right hemisphere 11.6
1851 Male, age 51, unknown 10.7
2590 Female, age 75, unknown 10.6
2699 Male, age 18, unknown 10.5
2665 Male, age 74, both hemispheres 10.4
2409 Female, age 72, unknown 10.3
1916 Female, age 42, unknown 10.2
1889 Female, age 72, unknown 10.0
1941 Male, age 53, unknown 9.8
2241 Male, age 72, unknown 9.8
Superior colliculus
nTPM: 10.4
2668 Female, age 75, unknown 11.1
2664 Male, age 75, both hemispheres 10.7
1913 Female, age 42, unknown 10.6
1796 Male, age 53, unknown 10.5
1895 Male, age 76, right hemisphere 10.5
1839 Male, age 51, unknown 10.4
1995 Male, age 72, unknown 10.2
2587 Male, age 74, left hemisphere 10.2
2087 Female, age 72, unknown 9.9
2261 Male, age 18, unknown 9.9
Ventral tegmental area
nTPM: 10.4
2218 Male, age 76, both hemispheres 11.0
2223 Female, age 72, unknown 10.5
2021 Male, age 53, unknown 10.4
1942 Male, age 51, unknown 10.3
1915 Female, age 42, unknown 10.2
2410 Female, age 72, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.6
Samples: 139

Max nTPM: 17.2
Min nTPM: 3.3
Std nTPM: 2.3
Median nTPM: 7.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 17.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 16.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 14.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 14.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 14.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 13.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 12.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 12.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 12.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 12.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 11.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 9.9
Min nTPM: 6.5
Sample A Female 8.0
Sample B Female 6.5
Sample C Male 9.9
Sample D Male 9.1
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 8.9
Min nTPM: 6.8
Sample B Female 6.8
Sample C Male 8.9
Sample D Male 7.1
Substantia nigra
nTPM: 8.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.4
Sample A Female 8.8
Sample B Female 7.4
Sample C Male 10.2
Sample D Male 7.4
Superior colliculi
nTPM: 8.5
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.7
Sample A Female 8.8
Sample B Female 6.7
Sample C Male 8.4
Sample D Male 10.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.8
Sample A Male 5.8
Sample B Male 8.9
Sample C Female 7.0
Sample D Female 9.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
513021 Antisense, RP_040810_01_A12, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.