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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA:16.4 nTPM
GTEx:15.9 nTPM
FANTOM5:59.3 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:17.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.8
1870 Female, age 42, unknown 17.0
2019 Male, age 18, unknown 17.0
2411 Female, age 72, unknown 16.5
1830 Male, age 51, unknown 15.7
1833 Male, age 53, unknown 15.0
2828 Female, age 72, unknown 14.2
1827 Male, age 72, unknown 14.0
2219 Male, age 76, both hemispheres 13.5
2666 Male, age 74, left hemisphere 12.8
2586 Male, age 75, left hemisphere 12.0
Dorsal raphe nucleus
nTPM: 14.7
2750 Male, age 76, both hemispheres 16.2
2016 Female, age 72, unknown 14.9
1828 Male, age 53, unknown 14.3
2298 Female, age 72, unknown 14.3
2047 Male, age 72, unknown 13.7
Inferior colliculus
nTPM: 14.5
2097 Female, age 72, unknown 15.2
1890 Male, age 53, unknown 14.8
1848 Female, age 42, unknown 14.4
2849 Male, age 72, unknown 13.5
Median raphe nucleus
nTPM: 15.5
2220 Male, age 76, midline 15.5
Pedunculopontine tegmental nucleus
nTPM: 15.7
2338 Male, age 61, both hemispheres 16.2
2334 Male, age 80, both hemispheres 15.7
1921 Female, age 85, both hemispheres 15.1
Periaquaductal grey, anterior
nTPM: 14.4
2502 Female, age 75, unknown 15.0
1947 Male, age 18, unknown 14.7
1795 Male, age 51, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 14.5
2850 Male, age 76, both hemispheres 16.0
2464 Female, age 72, unknown 14.2
1831 Male, age 72, unknown 13.9
1840 Male, age 53, unknown 13.9
Periaquaductal grey, lateral
nTPM: 14.0
2140 Male, age 76, both hemispheres 14.3
2053 Male, age 18, unknown 13.8
2272 Male, age 74, both hemispheres 13.8
Pretectal area
nTPM: 14.3
2273 Male, age 74, both hemispheres 16.9
1817 Female, age 42, unknown 15.0
2007 Male, age 72, unknown 14.5
2667 Female, age 75, unknown 14.5
2224 Female, age 72, unknown 14.4
2316 Male, age 76, right hemisphere 14.4
1815 Male, age 53, unknown 14.0
1944 Female, age 72, unknown 13.8
2825 Male, age 18, unknown 13.7
1816 Male, age 51, unknown 13.6
2407 Male, age 75, both hemispheres 12.5
Red nucleus
nTPM: 16.4
1821 Female, age 72, unknown 18.6
1954 Female, age 42, unknown 18.2
1865 Male, age 51, unknown 17.5
2823 Male, age 76, right hemisphere 16.8
1904 Male, age 53, unknown 16.7
2725 Female, age 75, unknown 16.7
2503 Female, age 72, unknown 16.6
2769 Male, age 72, unknown 16.4
2785 Male, age 18, unknown 16.3
2227 Male, age 72, unknown 16.0
2588 Male, age 74, left hemisphere 14.3
2584 Male, age 75, left hemisphere 12.9
Substantia nigra
nTPM: 14.5
2241 Male, age 72, unknown 16.1
1941 Male, age 53, unknown 15.4
1889 Female, age 72, unknown 15.3
1851 Male, age 51, unknown 14.8
2409 Female, age 72, unknown 14.4
2665 Male, age 74, both hemispheres 14.2
2699 Male, age 18, unknown 14.0
2590 Female, age 75, unknown 13.7
1916 Female, age 42, unknown 13.6
2583 Male, age 75, right hemisphere 13.5
Superior colliculus
nTPM: 14.3
1913 Female, age 42, unknown 16.7
1995 Male, age 72, unknown 15.8
1895 Male, age 76, right hemisphere 15.4
2587 Male, age 74, left hemisphere 15.3
1839 Male, age 51, unknown 14.1
2668 Female, age 75, unknown 13.8
1796 Male, age 53, unknown 13.6
2087 Female, age 72, unknown 13.3
2261 Male, age 18, unknown 13.2
2664 Male, age 75, both hemispheres 11.8
Ventral tegmental area
nTPM: 15.1
2223 Female, age 72, unknown 16.3
2410 Female, age 72, unknown 16.0
2021 Male, age 53, unknown 14.9
2218 Male, age 76, both hemispheres 14.9
1942 Male, age 51, unknown 14.3
1915 Female, age 42, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.9
Samples: 139

Max nTPM: 33.2
Min nTPM: 4.7
Std nTPM: 5.1
Median nTPM: 16.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 30.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 27.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 26.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 25.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 24.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 23.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 23.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 22.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.3
FF:10158-103A5 76 years, female 59.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 22.8
Min nTPM: 11.4
Sample A Female 22.8
Sample B Female 15.2
Sample C Male 13.8
Sample D Male 11.4
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 19.5
Min nTPM: 15.8
Sample B Female 15.8
Sample C Male 19.5
Sample D Male 16.7
Substantia nigra
nTPM: 16.6
Samples: 4

Max nTPM: 18.7
Min nTPM: 14.2
Sample A Female 18.7
Sample B Female 17.5
Sample C Male 15.8
Sample D Male 14.2
Superior colliculi
nTPM: 15.4
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.9
Sample A Female 15.4
Sample B Female 17.1
Sample C Male 16.1
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 19.6
Min nTPM: 13.7
Sample A Male 18.4
Sample B Male 13.7
Sample C Female 19.6
Sample D Female 19.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68522510 Antisense, RP_050118_02_B10, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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