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EIF3M
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:53.0 nTPM
HPA:53.0 nTPM
GTEx:49.5 nTPM
FANTOM5:115.4 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:140.7 nTPM
Allen mouse:1.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031063
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 51.8
2481 Female, age 94, left hemisphere 55.3
2846 Female, age 79, unknown 55.0
1857 Female, age 85, left hemisphere 54.9
2290 Female, age 72, unknown 53.4
1854 Male, age 80, left hemisphere 53.0
1781 Male, age 74, unknown 49.1
2288 Male, age 75, left hemisphere 48.3
2289 Male, age 61, right hemisphere 45.3
Claustrum
nTPM: 47.0
2196 Female, age 79, unknown 50.7
2392 Female, age 94, both hemispheres 49.1
2198 Male, age 80, both hemispheres 47.8
2491 Male, age 75, both hemispheres 46.9
2645 Female, age 72, unknown 46.5
1956 Male, age 74, unknown 46.3
2284 Female, age 91, both hemispheres 46.1
2568 Male, age 61, both hemispheres 45.5
2292 Female, age 85, both hemispheres 44.1
Globus pallidus, externus
nTPM: 47.9
2395 Male, age 75, both hemispheres 52.2
2772 Female, age 79, unknown 50.2
1996 Male, age 80, right hemisphere 49.8
2567 Female, age 72, unknown 43.6
2646 Male, age 61, right hemisphere 43.6
Globus pallidus, internus
nTPM: 50.0
2287 Male, age 75, right hemisphere 54.5
2037 Male, age 80, right hemisphere 52.1
2483 Female, age 94, right hemisphere 51.8
2778 Female, age 91, both hemispheres 51.6
1818 Male, age 74, unknown 49.2
2111 Female, age 85, right hemisphere 46.5
2566 Female, age 72, unknown 44.6
Nucleus accumbens
nTPM: 53.0
1856 Female, age 91, right hemisphere 57.7
2698 Female, age 72, unknown 54.6
2391 Female, age 94, left hemisphere 54.5
1783 Male, age 74, unknown 52.8
2286 Male, age 75, left hemisphere 52.7
2824 Male, age 61, right hemisphere 52.6
1806 Female, age 85, left hemisphere 52.3
2732 Male, age 80, right hemisphere 46.4
Nucleus basalis of Meynert
nTPM: 49.4
2393 Male, age 80, right hemisphere 53.4
2821 Male, age 75, both hemispheres 52.1
2484 Female, age 94, left hemisphere 48.8
2569 Male, age 61, both hemispheres 43.4
Nucleus of the diagonal band
nTPM: 51.0
1812 Female, age 91, both hemispheres 54.7
2775 Male, age 80, right hemisphere 53.6
2195 Female, age 85, both hemispheres 50.6
2029 Male, age 61, right hemisphere 48.0
1979 Male, age 74, unknown 47.8
Olfactory tubercle
nTPM: 49.5
1846 Male, age 80, right hemisphere 53.7
1998 Female, age 91, both hemispheres 50.6
2856 Male, age 75, right hemisphere 48.2
2487 Female, age 94, left hemisphere 45.4
Putamen
nTPM: 50.3
1838 Male, age 80, right hemisphere 56.8
2466 Female, age 79, unknown 53.0
1937 Female, age 91, right hemisphere 51.9
2482 Female, age 94, left hemisphere 51.8
1829 Male, age 74, unknown 51.2
2647 Male, age 75, left hemisphere 44.7
2489 Female, age 72, unknown 43.0
Septal nuclei
nTPM: 49.5
2031 Female, age 72, unknown 56.9
1960 Male, age 74, unknown 51.0
2629 Female, age 94, right hemisphere 49.7
2009 Female, age 91, both hemispheres 49.6
2199 Male, age 80, right hemisphere 48.3
2059 Female, age 85, both hemispheres 47.0
2394 Male, age 61, left hemisphere 43.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.7
Samples: 246

Max nTPM: 99.1
Min nTPM: 21.8
Std nTPM: 11.2
Median nTPM: 43.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 99.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 96.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 83.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 77.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 75.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 74.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 72.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 67.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 66.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 66.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.5
Samples: 246

Max nTPM: 97.4
Min nTPM: 30.7
Std nTPM: 10.3
Median nTPM: 48.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 97.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 96.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 89.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 89.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 79.7
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 78.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 76.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 72.7
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 69.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 69.6
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 68.3
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Brain - Putamen (basal ganglia)
Average nTPM: 45.5
Samples: 205

Max nTPM: 71.1
Min nTPM: 25.8
Std nTPM: 9.3
Median nTPM: 43.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 71.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 71.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 68.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 67.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 67.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 65.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 65.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 64.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 63.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 62.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 62.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 79.0
FF:10164-103B2 76 years, female 79.0
Globus pallidus
Scaled Tags Per Million: 69.0
FF:10175-103C4 60 years, female 73.4
FF:10161-103A8 76 years, female 64.6
Nucleus accumbens
Scaled Tags Per Million: 97.1
FF:10037-101F1 23-56 years, mixed 97.1
Putamen
Scaled Tags Per Million: 115.4
FF:10176-103C5 60 years, female 115.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Caudate
nTPM: 24.2
Samples: 4

Max nTPM: 26.2
Min nTPM: 21.3
Sample A Female 26.2
Sample B Female 21.3
Sample C Male 25.8
Sample D Male 23.4
Putamen
nTPM: 29.6
Samples: 4

Max nTPM: 38.3
Min nTPM: 23.7
Sample A Female 30.6
Sample B Female 23.7
Sample C Male 38.3
Sample D Male 25.6
Septum
nTPM: 28.4
Samples: 4

Max nTPM: 32.7
Min nTPM: 24.0
Sample A Female 32.7
Sample B Female 26.3
Sample C Male 30.4
Sample D Male 24.0
Ventral pallidum
nTPM: 26.6
Samples: 4

Max nTPM: 30.3
Min nTPM: 23.8
Sample A Female 27.5
Sample B Female 30.3
Sample C Male 24.8
Sample D Male 23.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 140.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 140.7
Samples: 4

Max nTPM: 149.9
Min nTPM: 134.3
Sample A Male 143.1
Sample B Male 134.3
Sample C Female 135.3
Sample D Female 149.9
Septum
nTPM: 138.4
Samples: 4

Max nTPM: 154.0
Min nTPM: 124.4
Sample A Male 124.4
Sample B Male 154.0
Sample C Female 148.6
Sample D Female 126.5
Ventral forebrain
nTPM: 129.1
Samples: 4

Max nTPM: 142.0
Min nTPM: 119.7
Sample A Male 119.7
Sample B Male 131.4
Sample C Female 142.0
Sample D Female 123.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68300974 Antisense, RP_041129_02_E07, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.0
68300974 Antisense, RP_041129_02_E07, Mouse strain C57BL/6J (56 days, male) 1.0

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