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B3GAT3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.3 nTPM
HPA:64.3 nTPM
GTEx:53.1 nTPM
FANTOM5:53.3 Scaled Tags Per Million
Pig:73.1 nTPM
Mouse:96.8 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.3
2586 Male, age 75, left hemisphere 76.7
2019 Male, age 18, unknown 67.7
2411 Female, age 72, unknown 67.4
1827 Male, age 72, unknown 66.7
2828 Female, age 72, unknown 63.1
1870 Female, age 42, unknown 62.7
2666 Male, age 74, left hemisphere 62.6
1833 Male, age 53, unknown 59.8
1830 Male, age 51, unknown 59.7
2219 Male, age 76, both hemispheres 56.2
Dorsal raphe nucleus
nTPM: 61.6
2750 Male, age 76, both hemispheres 63.4
1828 Male, age 53, unknown 62.9
2047 Male, age 72, unknown 62.3
2298 Female, age 72, unknown 62.2
2016 Female, age 72, unknown 56.9
Inferior colliculus
nTPM: 61.0
2097 Female, age 72, unknown 62.4
1848 Female, age 42, unknown 61.1
1890 Male, age 53, unknown 60.5
2849 Male, age 72, unknown 60.0
Median raphe nucleus
nTPM: 59.1
2220 Male, age 76, midline 59.1
Pedunculopontine tegmental nucleus
nTPM: 63.1
2334 Male, age 80, both hemispheres 64.2
1921 Female, age 85, both hemispheres 63.9
2338 Male, age 61, both hemispheres 61.2
Periaquaductal grey, anterior
nTPM: 63.6
1947 Male, age 18, unknown 64.9
1795 Male, age 51, unknown 64.5
2502 Female, age 75, unknown 61.4
Periaquaductal grey, dorsal
nTPM: 58.3
1831 Male, age 72, unknown 59.3
2464 Female, age 72, unknown 59.0
1840 Male, age 53, unknown 58.1
2850 Male, age 76, both hemispheres 56.8
Periaquaductal grey, lateral
nTPM: 57.1
2053 Male, age 18, unknown 58.4
2272 Male, age 74, both hemispheres 56.8
2140 Male, age 76, both hemispheres 56.2
Pretectal area
nTPM: 63.7
2007 Male, age 72, unknown 73.2
1817 Female, age 42, unknown 69.3
1816 Male, age 51, unknown 68.0
1944 Female, age 72, unknown 65.2
2667 Female, age 75, unknown 63.9
1815 Male, age 53, unknown 63.3
2407 Male, age 75, both hemispheres 62.2
2825 Male, age 18, unknown 60.8
2316 Male, age 76, right hemisphere 59.0
2224 Female, age 72, unknown 58.4
2273 Male, age 74, both hemispheres 57.3
Red nucleus
nTPM: 63.2
2584 Male, age 75, left hemisphere 71.3
2823 Male, age 76, right hemisphere 65.3
2785 Male, age 18, unknown 65.0
2588 Male, age 74, left hemisphere 64.6
1821 Female, age 72, unknown 63.5
2769 Male, age 72, unknown 63.1
2725 Female, age 75, unknown 63.0
2227 Male, age 72, unknown 61.8
1865 Male, age 51, unknown 60.9
2503 Female, age 72, unknown 60.1
1954 Female, age 42, unknown 60.0
1904 Male, age 53, unknown 59.7
Substantia nigra
nTPM: 61.5
1941 Male, age 53, unknown 70.7
1889 Female, age 72, unknown 65.2
2583 Male, age 75, right hemisphere 64.3
2665 Male, age 74, both hemispheres 64.3
1916 Female, age 42, unknown 64.2
1851 Male, age 51, unknown 62.4
2590 Female, age 75, unknown 59.4
2409 Female, age 72, unknown 55.9
2699 Male, age 18, unknown 54.3
2241 Male, age 72, unknown 54.2
Superior colliculus
nTPM: 61.8
2668 Female, age 75, unknown 65.1
2261 Male, age 18, unknown 64.2
1796 Male, age 53, unknown 63.1
2087 Female, age 72, unknown 63.1
1895 Male, age 76, right hemisphere 61.7
2664 Male, age 75, both hemispheres 61.5
1839 Male, age 51, unknown 61.0
1995 Male, age 72, unknown 59.5
2587 Male, age 74, left hemisphere 59.5
1913 Female, age 42, unknown 59.4
Ventral tegmental area
nTPM: 61.2
2410 Female, age 72, unknown 64.2
1915 Female, age 42, unknown 62.4
1942 Male, age 51, unknown 61.6
2218 Male, age 76, both hemispheres 60.7
2223 Female, age 72, unknown 59.9
2021 Male, age 53, unknown 58.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.1
Samples: 139

Max nTPM: 127.7
Min nTPM: 26.8
Std nTPM: 15.0
Median nTPM: 52.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 127.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 118.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 93.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 83.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 76.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 76.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 76.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 73.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 73.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.3
FF:10158-103A5 76 years, female 53.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.1
Pig sample Sample description nTPM
Midbrain
nTPM: 69.2
Samples: 4

Max nTPM: 81.8
Min nTPM: 54.4
Sample A Female 81.8
Sample B Female 54.4
Sample C Male 79.2
Sample D Male 61.5
Periaqueductal gray
nTPM: 50.2
Samples: 3

Max nTPM: 56.1
Min nTPM: 45.5
Sample B Female 45.5
Sample C Male 56.1
Sample D Male 48.9
Substantia nigra
nTPM: 58.5
Samples: 4

Max nTPM: 69.9
Min nTPM: 44.2
Sample A Female 69.9
Sample B Female 44.2
Sample C Male 62.6
Sample D Male 57.3
Superior colliculi
nTPM: 73.1
Samples: 4

Max nTPM: 81.3
Min nTPM: 63.4
Sample A Female 81.3
Sample B Female 63.4
Sample C Male 74.7
Sample D Male 73.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.8
Samples: 4

Max nTPM: 108.2
Min nTPM: 86.9
Sample A Male 108.2
Sample B Male 94.2
Sample C Female 86.9
Sample D Female 98.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71283674 Antisense, RP_050825_01_C10, Mouse strain C57BL/6J (56 days, male) 0.7

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