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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.9 nTPM
HPA:136.9 nTPM
GTEx:548.2 nTPM
FANTOM5:695.2 Scaled Tags Per Million
Pig:208.7 nTPM
Mouse:477.0 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 136.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.2
2586 Male, age 75, left hemisphere 134.8
2411 Female, age 72, unknown 133.8
1870 Female, age 42, unknown 132.0
2019 Male, age 18, unknown 129.3
1830 Male, age 51, unknown 127.4
1833 Male, age 53, unknown 124.0
2666 Male, age 74, left hemisphere 103.3
1827 Male, age 72, unknown 102.2
2828 Female, age 72, unknown 101.3
2219 Male, age 76, both hemispheres 93.7
Dorsal raphe nucleus
nTPM: 104.3
2750 Male, age 76, both hemispheres 126.1
2047 Male, age 72, unknown 105.5
1828 Male, age 53, unknown 102.5
2016 Female, age 72, unknown 95.7
2298 Female, age 72, unknown 91.6
Inferior colliculus
nTPM: 104.5
1890 Male, age 53, unknown 112.9
1848 Female, age 42, unknown 105.6
2097 Female, age 72, unknown 103.7
2849 Male, age 72, unknown 95.7
Median raphe nucleus
nTPM: 109.6
2220 Male, age 76, midline 109.6
Pedunculopontine tegmental nucleus
nTPM: 108.7
2334 Male, age 80, both hemispheres 114.8
2338 Male, age 61, both hemispheres 107.6
1921 Female, age 85, both hemispheres 103.8
Periaquaductal grey, anterior
nTPM: 92.5
1947 Male, age 18, unknown 99.2
2502 Female, age 75, unknown 94.0
1795 Male, age 51, unknown 84.4
Periaquaductal grey, dorsal
nTPM: 88.5
2464 Female, age 72, unknown 97.4
1831 Male, age 72, unknown 89.9
1840 Male, age 53, unknown 84.8
2850 Male, age 76, both hemispheres 81.7
Periaquaductal grey, lateral
nTPM: 87.3
2053 Male, age 18, unknown 98.8
2272 Male, age 74, both hemispheres 84.0
2140 Male, age 76, both hemispheres 79.1
Pretectal area
nTPM: 94.9
1815 Male, age 53, unknown 107.6
1817 Female, age 42, unknown 104.3
2007 Male, age 72, unknown 101.5
2407 Male, age 75, both hemispheres 100.7
2316 Male, age 76, right hemisphere 95.0
2825 Male, age 18, unknown 94.9
2667 Female, age 75, unknown 91.8
1944 Female, age 72, unknown 89.8
2224 Female, age 72, unknown 88.3
1816 Male, age 51, unknown 87.7
2273 Male, age 74, both hemispheres 82.6
Red nucleus
nTPM: 136.9
1821 Female, age 72, unknown 156.9
2588 Male, age 74, left hemisphere 150.4
1904 Male, age 53, unknown 146.9
1865 Male, age 51, unknown 144.1
2227 Male, age 72, unknown 141.4
1954 Female, age 42, unknown 140.3
2769 Male, age 72, unknown 138.3
2503 Female, age 72, unknown 129.2
2823 Male, age 76, right hemisphere 127.9
2785 Male, age 18, unknown 124.4
2584 Male, age 75, left hemisphere 121.8
2725 Female, age 75, unknown 121.7
Substantia nigra
nTPM: 106.1
2583 Male, age 75, right hemisphere 121.8
1851 Male, age 51, unknown 113.6
1889 Female, age 72, unknown 111.2
2409 Female, age 72, unknown 108.7
2241 Male, age 72, unknown 108.0
2590 Female, age 75, unknown 104.1
1941 Male, age 53, unknown 99.7
1916 Female, age 42, unknown 98.4
2665 Male, age 74, both hemispheres 98.0
2699 Male, age 18, unknown 97.3
Superior colliculus
nTPM: 103.8
2668 Female, age 75, unknown 117.5
2587 Male, age 74, left hemisphere 114.3
1913 Female, age 42, unknown 110.8
1839 Male, age 51, unknown 107.1
1995 Male, age 72, unknown 106.6
1895 Male, age 76, right hemisphere 106.4
2664 Male, age 75, both hemispheres 103.9
1796 Male, age 53, unknown 93.4
2261 Male, age 18, unknown 89.2
2087 Female, age 72, unknown 89.0
Ventral tegmental area
nTPM: 113.1
2223 Female, age 72, unknown 147.0
2410 Female, age 72, unknown 116.7
2218 Male, age 76, both hemispheres 107.3
1942 Male, age 51, unknown 104.9
1915 Female, age 42, unknown 103.6
2021 Male, age 53, unknown 98.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 548.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 548.2
Samples: 139

Max nTPM: 1150.5
Min nTPM: 217.6
Std nTPM: 173.7
Median nTPM: 513.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1150.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1123.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1032.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 949.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 941.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 922.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 891.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 888.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 883.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 875.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 843.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 695.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 695.2
FF:10158-103A5 76 years, female 695.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 208.7
Pig sample Sample description nTPM
Midbrain
nTPM: 208.7
Samples: 4

Max nTPM: 452.0
Min nTPM: 114.1
Sample A Female 452.0
Sample B Female 152.5
Sample C Male 114.1
Sample D Male 116.1
Periaqueductal gray
nTPM: 118.2
Samples: 3

Max nTPM: 133.1
Min nTPM: 107.5
Sample B Female 133.1
Sample C Male 107.5
Sample D Male 114.1
Substantia nigra
nTPM: 157.9
Samples: 4

Max nTPM: 224.2
Min nTPM: 100.3
Sample A Female 173.4
Sample B Female 100.3
Sample C Male 133.6
Sample D Male 224.2
Superior colliculi
nTPM: 148.9
Samples: 4

Max nTPM: 176.9
Min nTPM: 87.9
Sample A Female 175.1
Sample B Female 87.9
Sample C Male 155.7
Sample D Male 176.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 477.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 477.0
Samples: 4

Max nTPM: 495.6
Min nTPM: 468.9
Sample A Male 470.0
Sample B Male 468.9
Sample C Female 473.5
Sample D Female 495.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
68632051 Antisense, RP_050125_01_F03, Mouse strain C57BL/6J (56 days, male) 17.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.