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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA:20.7 nTPM
GTEx:27.9 nTPM
FANTOM5:284.6 Scaled Tags Per Million
Pig:107.5 nTPM
Mouse:170.6 nTPM
Allen mouse:12.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.3
1857 Female, age 85, left hemisphere 23.2
1781 Male, age 74, unknown 21.7
2846 Female, age 79, unknown 21.7
2290 Female, age 72, unknown 21.4
1854 Male, age 80, left hemisphere 19.6
2288 Male, age 75, left hemisphere 9.9
2289 Male, age 61, right hemisphere 9.7
2481 Female, age 94, left hemisphere 3.5
Claustrum
nTPM: 17.9
2284 Female, age 91, both hemispheres 28.0
2491 Male, age 75, both hemispheres 25.3
2568 Male, age 61, both hemispheres 23.7
2645 Female, age 72, unknown 19.3
2198 Male, age 80, both hemispheres 18.1
2392 Female, age 94, both hemispheres 17.4
2196 Female, age 79, unknown 10.9
1956 Male, age 74, unknown 10.5
2292 Female, age 85, both hemispheres 7.8
Globus pallidus, externus
nTPM: 0.1
2646 Male, age 61, right hemisphere 0.7
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.4
2483 Female, age 94, right hemisphere 3.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 17.6
1856 Female, age 91, right hemisphere 37.9
2824 Male, age 61, right hemisphere 27.8
1783 Male, age 74, unknown 25.0
1806 Female, age 85, left hemisphere 23.0
2698 Female, age 72, unknown 13.9
2286 Male, age 75, left hemisphere 9.6
2391 Female, age 94, left hemisphere 2.1
2732 Male, age 80, right hemisphere 1.7
Nucleus basalis of Meynert
nTPM: 10.7
2393 Male, age 80, right hemisphere 18.1
2484 Female, age 94, left hemisphere 15.8
2821 Male, age 75, both hemispheres 7.6
2569 Male, age 61, both hemispheres 1.2
Nucleus of the diagonal band
nTPM: 18.0
2775 Male, age 80, right hemisphere 20.5
2029 Male, age 61, right hemisphere 20.2
1812 Female, age 91, both hemispheres 20.0
2195 Female, age 85, both hemispheres 17.6
1979 Male, age 74, unknown 11.9
Olfactory tubercle
nTPM: 20.7
1998 Female, age 91, both hemispheres 28.7
2856 Male, age 75, right hemisphere 19.8
2487 Female, age 94, left hemisphere 19.6
1846 Male, age 80, right hemisphere 14.9
Putamen
nTPM: 20.6
1838 Male, age 80, right hemisphere 31.6
1937 Female, age 91, right hemisphere 26.8
2466 Female, age 79, unknown 23.8
1829 Male, age 74, unknown 21.9
2489 Female, age 72, unknown 17.3
2647 Male, age 75, left hemisphere 16.8
2482 Female, age 94, left hemisphere 5.9
Septal nuclei
nTPM: 13.1
1960 Male, age 74, unknown 20.1
2629 Female, age 94, right hemisphere 15.2
2031 Female, age 72, unknown 15.0
2009 Female, age 91, both hemispheres 14.4
2059 Female, age 85, both hemispheres 12.7
2394 Male, age 61, left hemisphere 8.6
2199 Male, age 80, right hemisphere 5.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.7
Samples: 246

Max nTPM: 63.2
Min nTPM: 1.8
Std nTPM: 14.0
Median nTPM: 18.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 63.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 56.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 55.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 54.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 54.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 54.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 53.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 52.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 50.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 49.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 49.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.9
Samples: 246

Max nTPM: 73.2
Min nTPM: 1.1
Std nTPM: 16.0
Median nTPM: 28.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 73.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 69.4
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 64.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 62.8
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 60.9
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 60.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 59.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 58.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 56.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 56.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 56.4
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Brain - Putamen (basal ganglia)
Average nTPM: 20.5
Samples: 205

Max nTPM: 57.7
Min nTPM: 2.4
Std nTPM: 13.1
Median nTPM: 17.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 57.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 55.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 53.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 49.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 49.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 47.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 46.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 46.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 46.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 46.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 45.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 284.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 199.8
FF:10164-103B2 76 years, female 199.8
Globus pallidus
Scaled Tags Per Million: 86.2
FF:10175-103C4 60 years, female 139.7
FF:10161-103A8 76 years, female 32.7
Nucleus accumbens
Scaled Tags Per Million: 191.1
FF:10037-101F1 23-56 years, mixed 191.1
Putamen
Scaled Tags Per Million: 284.6
FF:10176-103C5 60 years, female 284.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 107.5
Pig sample Sample description nTPM
Caudate
nTPM: 107.5
Samples: 4

Max nTPM: 132.8
Min nTPM: 86.8
Sample A Female 86.8
Sample B Female 106.7
Sample C Male 132.8
Sample D Male 103.8
Putamen
nTPM: 106.9
Samples: 4

Max nTPM: 154.7
Min nTPM: 41.4
Sample A Female 41.4
Sample B Female 107.0
Sample C Male 154.7
Sample D Male 124.6
Septum
nTPM: 67.0
Samples: 4

Max nTPM: 81.9
Min nTPM: 51.6
Sample A Female 80.2
Sample B Female 81.9
Sample C Male 51.6
Sample D Male 54.3
Ventral pallidum
nTPM: 79.1
Samples: 4

Max nTPM: 89.5
Min nTPM: 66.2
Sample A Female 89.5
Sample B Female 87.6
Sample C Male 73.0
Sample D Male 66.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 170.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 170.6
Samples: 4

Max nTPM: 173.7
Min nTPM: 167.6
Sample A Male 173.0
Sample B Male 167.6
Sample C Female 168.0
Sample D Female 173.7
Septum
nTPM: 124.9
Samples: 4

Max nTPM: 132.1
Min nTPM: 119.1
Sample A Male 119.2
Sample B Male 129.2
Sample C Female 119.1
Sample D Female 132.1
Ventral forebrain
nTPM: 141.6
Samples: 4

Max nTPM: 151.5
Min nTPM: 122.6
Sample A Male 122.6
Sample B Male 151.5
Sample C Female 151.4
Sample D Female 140.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.6
73573157 Antisense, RP_051121_03_D06, Mouse strain C57BL/6J (56 days, male) 13.8
74988751 Antisense, RP_060315_05_G06, Mouse strain C57BL/6J (56 days, male) 12.1
70565945 Antisense, RP_050628_01_G07, Mouse strain C57BL/6J (56 days, male) 11.7
Pallidum
Expression energy: 10.4
73573157 Antisense, RP_051121_03_D06, Mouse strain C57BL/6J (56 days, male) 11.6
70565945 Antisense, RP_050628_01_G07, Mouse strain C57BL/6J (56 days, male) 10.2
74988751 Antisense, RP_060315_05_G06, Mouse strain C57BL/6J (56 days, male) 9.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.