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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA:21.6 nTPM
GTEx:16.9 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:11.1 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.9
2289 Male, age 61, right hemisphere 22.1
1854 Male, age 80, left hemisphere 20.5
2290 Female, age 72, unknown 20.3
1781 Male, age 74, unknown 19.8
2288 Male, age 75, left hemisphere 19.7
2481 Female, age 94, left hemisphere 19.2
2846 Female, age 79, unknown 19.2
1857 Female, age 85, left hemisphere 18.5
Claustrum
nTPM: 20.9
2568 Male, age 61, both hemispheres 22.6
2292 Female, age 85, both hemispheres 22.1
2645 Female, age 72, unknown 21.8
2491 Male, age 75, both hemispheres 20.6
2284 Female, age 91, both hemispheres 20.5
2392 Female, age 94, both hemispheres 20.4
1956 Male, age 74, unknown 20.3
2198 Male, age 80, both hemispheres 19.8
2196 Female, age 79, unknown 19.7
Globus pallidus, externus
nTPM: 21.1
2567 Female, age 72, unknown 24.6
2646 Male, age 61, right hemisphere 22.4
1996 Male, age 80, right hemisphere 20.0
2772 Female, age 79, unknown 19.4
2395 Male, age 75, both hemispheres 19.2
Globus pallidus, internus
nTPM: 21.6
2111 Female, age 85, right hemisphere 24.0
2778 Female, age 91, both hemispheres 23.4
2566 Female, age 72, unknown 23.1
2037 Male, age 80, right hemisphere 21.8
1818 Male, age 74, unknown 20.7
2287 Male, age 75, right hemisphere 19.6
2483 Female, age 94, right hemisphere 18.7
Nucleus accumbens
nTPM: 20.2
1783 Male, age 74, unknown 21.2
2824 Male, age 61, right hemisphere 20.6
2732 Male, age 80, right hemisphere 20.5
2698 Female, age 72, unknown 20.4
2391 Female, age 94, left hemisphere 20.2
1806 Female, age 85, left hemisphere 20.1
1856 Female, age 91, right hemisphere 19.4
2286 Male, age 75, left hemisphere 19.1
Nucleus basalis of Meynert
nTPM: 20.2
2569 Male, age 61, both hemispheres 22.1
2393 Male, age 80, right hemisphere 19.8
2821 Male, age 75, both hemispheres 19.5
2484 Female, age 94, left hemisphere 19.2
Nucleus of the diagonal band
nTPM: 19.0
2029 Male, age 61, right hemisphere 19.6
2195 Female, age 85, both hemispheres 19.1
1979 Male, age 74, unknown 19.0
1812 Female, age 91, both hemispheres 18.7
2775 Male, age 80, right hemisphere 18.7
Olfactory tubercle
nTPM: 19.8
2856 Male, age 75, right hemisphere 20.6
1998 Female, age 91, both hemispheres 20.0
2487 Female, age 94, left hemisphere 19.5
1846 Male, age 80, right hemisphere 19.2
Putamen
nTPM: 20.5
2489 Female, age 72, unknown 21.9
2647 Male, age 75, left hemisphere 21.3
1829 Male, age 74, unknown 20.4
1937 Female, age 91, right hemisphere 20.4
2466 Female, age 79, unknown 20.0
1838 Male, age 80, right hemisphere 19.9
2482 Female, age 94, left hemisphere 19.5
Septal nuclei
nTPM: 19.3
2629 Female, age 94, right hemisphere 20.4
2059 Female, age 85, both hemispheres 19.8
2394 Male, age 61, left hemisphere 19.5
2199 Male, age 80, right hemisphere 19.2
2031 Female, age 72, unknown 19.1
2009 Female, age 91, both hemispheres 18.8
1960 Male, age 74, unknown 18.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.6
Samples: 246

Max nTPM: 26.8
Min nTPM: 7.7
Std nTPM: 3.2
Median nTPM: 15.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 26.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 26.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 24.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 24.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 23.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 23.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 22.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 22.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 21.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 21.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 21.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.5
Samples: 246

Max nTPM: 40.6
Min nTPM: 9.2
Std nTPM: 4.6
Median nTPM: 15.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 40.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 40.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 35.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 31.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 28.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 27.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 26.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 26.0
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 25.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 25.5
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 25.4
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Brain - Putamen (basal ganglia)
Average nTPM: 16.9
Samples: 205

Max nTPM: 27.2
Min nTPM: 9.9
Std nTPM: 3.6
Median nTPM: 16.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 27.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 26.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 26.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 25.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 25.8
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 25.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 25.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 24.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 24.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 24.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 24.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.8
FF:10164-103B2 76 years, female 35.8
Globus pallidus
Scaled Tags Per Million: 32.7
FF:10161-103A8 76 years, female 35.4
FF:10175-103C4 60 years, female 29.9
Nucleus accumbens
Scaled Tags Per Million: 31.8
FF:10037-101F1 23-56 years, mixed 31.8
Putamen
Scaled Tags Per Million: 28.4
FF:10176-103C5 60 years, female 28.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Caudate
nTPM: 13.7
Samples: 4

Max nTPM: 15.2
Min nTPM: 12.7
Sample A Female 15.2
Sample B Female 13.8
Sample C Male 12.9
Sample D Male 12.7
Putamen
nTPM: 15.5
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.1
Sample A Female 18.0
Sample B Female 13.1
Sample C Male 14.3
Sample D Male 16.7
Septum
nTPM: 15.5
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.6
Sample A Female 17.7
Sample B Female 13.6
Sample C Male 16.4
Sample D Male 14.1
Ventral pallidum
nTPM: 14.6
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.5
Sample A Female 14.1
Sample B Female 14.8
Sample C Male 16.0
Sample D Male 13.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.1
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.7
Sample A Male 9.7
Sample B Male 11.2
Sample C Female 12.5
Sample D Female 11.0
Septum
nTPM: 8.8
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.7
Sample A Male 8.9
Sample B Male 8.3
Sample C Female 7.7
Sample D Female 10.4
Ventral forebrain
nTPM: 10.2
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.9
Sample A Male 11.5
Sample B Male 10.0
Sample C Female 7.9
Sample D Female 11.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
80525705 Antisense, RP_071204_02_B10, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
80525705 Antisense, RP_071204_02_B10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.