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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:12.2 nTPM
HPA:12.2 nTPM
GTEx:18.2 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:9.3 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039334
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.2
Sample id Sample description nTPM
Hippocampus
nTPM: 12.1
2621 Female, age 67, right hemisphere 12.7
2148 Female, age 91, left hemisphere 12.6
1898 Male, age 80, left hemisphere 12.4
2529 Female, age 94, left hemisphere 12.4
1911 Female, age 85, right hemisphere 11.7
1855 Male, age 76, left hemisphere 10.9
Dentate gyrus
nTPM: 11.4
2530 Female, age 94, left hemisphere 12.7
2528 Male, age 74, both hemispheres 12.3
1927 Female, age 91, both hemispheres 11.8
2531 Female, age 67, both hemispheres 10.9
2010 Male, age 76, both hemispheres 10.8
2246 Female, age 85, both hemispheres 10.1
Entorhinal gyrus
nTPM: 10.5
2117 Female, age 91, right hemisphere 11.5
2764 Male, age 80, right hemisphere 11.3
2686 Male, age 75, right hemisphere 10.7
1787 Male, age 76, left hemisphere 10.5
2613 Female, age 94, left hemisphere 9.7
1938 Female, age 85, left hemisphere 9.6
Hippocampus, CA1
nTPM: 11.4
2749 Male, age 80, left hemisphere 13.0
2527 Male, age 74, both hemispheres 12.0
1873 Female, age 85, both hemispheres 11.5
2082 Female, age 91, right hemisphere 10.5
2045 Male, age 76, both hemispheres 10.0
Hippocampus, CA2
nTPM: 12.2
1963 Male, age 80, left hemisphere 14.3
2437 Female, age 94, left hemisphere 13.4
2249 Male, age 74, both hemispheres 12.7
1892 Male, age 76, both hemispheres 11.9
1940 Female, age 85, left hemisphere 10.6
2113 Female, age 91, right hemisphere 10.2
Hippocampus, CA3
nTPM: 11.6
2436 Male, age 74, both hemispheres 14.7
2137 Male, age 80, left hemisphere 11.7
2861 Female, age 67, both hemispheres 11.1
1867 Male, age 76, both hemispheres 10.8
2620 Female, age 94, left hemisphere 10.8
1891 Female, age 85, both hemispheres 10.6
Parahippocampal cortex
nTPM: 10.3
2245 Female, age 91, both hemispheres 11.3
1990 Female, age 91, right hemisphere 11.1
2250 Female, age 67, right hemisphere 11.1
2622 Female, age 67, right hemisphere 10.6
2532 Female, age 72, left hemisphere 10.3
1933 Female, age 85, both hemispheres 10.1
1850 Male, age 80, both hemispheres 9.9
2692 Male, age 74, both hemispheres 9.8
2018 Male, age 76, both hemispheres 9.3
2693 Female, age 94, both hemispheres 9.3
Perirhinal gyrus
nTPM: 10.0
1794 Male, age 80, right hemisphere 10.9
1841 Female, age 85, right hemisphere 10.2
2521 Female, age 94, right hemisphere 10.1
1847 Female, age 91, left hemisphere 10.0
2848 Male, age 76, right hemisphere 8.5
Subiculum
nTPM: 11.2
2438 Female, age 94, left hemisphere 12.1
2729 Female, age 91, right hemisphere 11.8
1901 Male, age 80, both hemispheres 11.1
2619 Male, age 74, both hemispheres 11.1
1977 Female, age 85, both hemispheres 11.0
2042 Male, age 76, both hemispheres 10.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.2
Samples: 197

Max nTPM: 36.3
Min nTPM: 5.4
Std nTPM: 4.9
Median nTPM: 17.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 36.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 33.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 32.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 32.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 30.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 29.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 27.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 27.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 27.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 27.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 26.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 8.9
FF:10153-102I9 76 years, female 11.6
FF:10169-103B7 60 years, female 6.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 11.1
Samples: 4

Max nTPM: 13.9
Min nTPM: 8.0
Sample A Female 13.9
Sample B Female 11.2
Sample C Male 11.2
Sample D Male 8.0
Entorhinal cortex
nTPM: 9.5
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.2
Sample A Female 9.6
Sample B Female 10.5
Sample C Male 9.6
Sample D Male 8.2
Subiculum
nTPM: 10.3
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.5
Sample A Female 11.2
Sample B Female 9.7
Sample C Male 10.8
Sample D Male 9.5
Ventral hippocampus
nTPM: 11.4
Samples: 4

Max nTPM: 14.5
Min nTPM: 8.8
Sample A Female 13.1
Sample B Female 9.0
Sample C Male 14.5
Sample D Male 8.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.0
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.7
Sample A Male 8.3
Sample B Male 7.7
Sample C Female 7.9
Sample D Female 8.0
Hippocampal formation
nTPM: 9.3
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.6
Sample A Male 8.3
Sample B Male 7.6
Sample C Female 9.5
Sample D Female 11.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
671237 Antisense, RP_040914_02_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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