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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:731.9 nTPM
HPA:731.9 nTPM
GTEx:669.7 nTPM
FANTOM5:1153.0 Scaled Tags Per Million
Pig:142.0 nTPM
Mouse:2397.1 nTPM
Allen mouse:29.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004177Antibody CAB006252
Glial cells Not detectedMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 731.9
Sample id Sample description nTPM
Hippocampus
nTPM: 597.9
1898 Male, age 80, left hemisphere 790.1
1855 Male, age 76, left hemisphere 635.0
2621 Female, age 67, right hemisphere 602.5
2529 Female, age 94, left hemisphere 561.8
2148 Female, age 91, left hemisphere 529.6
1911 Female, age 85, right hemisphere 468.5
Dentate gyrus
nTPM: 604.8
2530 Female, age 94, left hemisphere 735.4
1927 Female, age 91, both hemispheres 658.4
2010 Male, age 76, both hemispheres 652.1
2528 Male, age 74, both hemispheres 578.2
2246 Female, age 85, both hemispheres 535.2
2531 Female, age 67, both hemispheres 469.2
Entorhinal gyrus
nTPM: 608.8
2764 Male, age 80, right hemisphere 801.6
2613 Female, age 94, left hemisphere 670.3
1938 Female, age 85, left hemisphere 612.3
1787 Male, age 76, left hemisphere 556.3
2117 Female, age 91, right hemisphere 509.6
2686 Male, age 75, right hemisphere 502.8
Hippocampus, CA1
nTPM: 683.2
2749 Male, age 80, left hemisphere 1014.2
1873 Female, age 85, both hemispheres 635.2
2527 Male, age 74, both hemispheres 616.6
2045 Male, age 76, both hemispheres 581.9
2082 Female, age 91, right hemisphere 568.0
Hippocampus, CA2
nTPM: 631.4
1892 Male, age 76, both hemispheres 725.8
1963 Male, age 80, left hemisphere 722.0
2249 Male, age 74, both hemispheres 648.5
2437 Female, age 94, left hemisphere 629.2
2113 Female, age 91, right hemisphere 542.4
1940 Female, age 85, left hemisphere 520.2
Hippocampus, CA3
nTPM: 629.7
2137 Male, age 80, left hemisphere 750.3
2436 Male, age 74, both hemispheres 741.3
1867 Male, age 76, both hemispheres 648.6
2620 Female, age 94, left hemisphere 600.9
2861 Female, age 67, both hemispheres 538.1
1891 Female, age 85, both hemispheres 499.2
Parahippocampal cortex
nTPM: 593.8
1850 Male, age 80, both hemispheres 738.8
2245 Female, age 91, both hemispheres 655.5
1933 Female, age 85, both hemispheres 629.6
1990 Female, age 91, right hemisphere 617.0
2532 Female, age 72, left hemisphere 613.5
2250 Female, age 67, right hemisphere 604.6
2018 Male, age 76, both hemispheres 562.7
2693 Female, age 94, both hemispheres 552.8
2622 Female, age 67, right hemisphere 508.0
2692 Male, age 74, both hemispheres 455.8
Perirhinal gyrus
nTPM: 731.9
1847 Female, age 91, left hemisphere 882.4
1794 Male, age 80, right hemisphere 796.4
1841 Female, age 85, right hemisphere 727.3
2521 Female, age 94, right hemisphere 651.1
2848 Male, age 76, right hemisphere 602.0
Subiculum
nTPM: 538.3
1977 Female, age 85, both hemispheres 597.7
1901 Male, age 80, both hemispheres 594.7
2619 Male, age 74, both hemispheres 565.7
2438 Female, age 94, left hemisphere 526.7
2042 Male, age 76, both hemispheres 477.6
2729 Female, age 91, right hemisphere 467.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 669.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 669.7
Samples: 197

Max nTPM: 1534.6
Min nTPM: 265.2
Std nTPM: 258.8
Median nTPM: 621.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1534.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1477.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1414.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1257.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 1213.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1205.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1204.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1163.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 1155.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1144.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1142.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1153.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1153.0
FF:10169-103B7 60 years, female 1301.6
FF:10153-102I9 76 years, female 1004.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 142.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 142.0
Samples: 4

Max nTPM: 207.8
Min nTPM: 88.6
Sample A Female 207.8
Sample B Female 140.3
Sample C Male 131.2
Sample D Male 88.6
Entorhinal cortex
nTPM: 118.8
Samples: 4

Max nTPM: 131.4
Min nTPM: 107.0
Sample A Female 131.4
Sample B Female 120.0
Sample C Male 116.7
Sample D Male 107.0
Subiculum
nTPM: 108.9
Samples: 4

Max nTPM: 136.7
Min nTPM: 92.2
Sample A Female 136.7
Sample B Female 92.2
Sample C Male 110.1
Sample D Male 96.6
Ventral hippocampus
nTPM: 139.9
Samples: 4

Max nTPM: 189.9
Min nTPM: 91.9
Sample A Female 155.3
Sample B Female 91.9
Sample C Male 189.9
Sample D Male 122.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2397.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2102.1
Samples: 4

Max nTPM: 2238.5
Min nTPM: 1933.8
Sample A Male 1933.8
Sample B Male 2109.1
Sample C Female 2126.8
Sample D Female 2238.5
Hippocampal formation
nTPM: 2397.1
Samples: 4

Max nTPM: 2509.8
Min nTPM: 2261.3
Sample A Male 2421.3
Sample B Male 2261.3
Sample C Female 2509.8
Sample D Female 2396.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 29.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 29.1
77620804 Antisense, RP_070129_03_H04, Mouse strain C57BL/6J (56 days, male) 29.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.