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TLCD3B
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA:17.0 nTPM
GTEx:31.5 nTPM
FANTOM5:64.5 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:25.5 nTPM
Allen mouse:15.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.0
Sample id Sample description nTPM
Hippocampus
nTPM: 15.2
2148 Female, age 91, left hemisphere 23.8
2621 Female, age 67, right hemisphere 21.9
1898 Male, age 80, left hemisphere 14.2
2529 Female, age 94, left hemisphere 10.7
1855 Male, age 76, left hemisphere 10.2
1911 Female, age 85, right hemisphere 10.2
Dentate gyrus
nTPM: 16.1
2531 Female, age 67, both hemispheres 23.2
1927 Female, age 91, both hemispheres 21.5
2530 Female, age 94, left hemisphere 18.5
2528 Male, age 74, both hemispheres 16.7
2246 Female, age 85, both hemispheres 10.4
2010 Male, age 76, both hemispheres 6.6
Entorhinal gyrus
nTPM: 12.5
2613 Female, age 94, left hemisphere 22.5
2686 Male, age 75, right hemisphere 15.9
2764 Male, age 80, right hemisphere 12.7
1787 Male, age 76, left hemisphere 10.0
1938 Female, age 85, left hemisphere 9.3
2117 Female, age 91, right hemisphere 4.6
Hippocampus, CA1
nTPM: 12.6
2749 Male, age 80, left hemisphere 21.0
2527 Male, age 74, both hemispheres 14.8
1873 Female, age 85, both hemispheres 12.7
2045 Male, age 76, both hemispheres 8.3
2082 Female, age 91, right hemisphere 6.2
Hippocampus, CA2
nTPM: 11.9
2437 Female, age 94, left hemisphere 18.2
1963 Male, age 80, left hemisphere 16.9
1892 Male, age 76, both hemispheres 13.0
2249 Male, age 74, both hemispheres 9.6
2113 Female, age 91, right hemisphere 7.5
1940 Female, age 85, left hemisphere 5.9
Hippocampus, CA3
nTPM: 17.0
2861 Female, age 67, both hemispheres 30.4
2620 Female, age 94, left hemisphere 30.3
2137 Male, age 80, left hemisphere 18.7
1867 Male, age 76, both hemispheres 8.0
1891 Female, age 85, both hemispheres 7.7
2436 Male, age 74, both hemispheres 7.1
Parahippocampal cortex
nTPM: 12.6
2622 Female, age 67, right hemisphere 20.2
2245 Female, age 91, both hemispheres 19.5
2250 Female, age 67, right hemisphere 17.8
2693 Female, age 94, both hemispheres 15.2
2692 Male, age 74, both hemispheres 12.0
1990 Female, age 91, right hemisphere 11.3
1933 Female, age 85, both hemispheres 9.4
2532 Female, age 72, left hemisphere 8.9
1850 Male, age 80, both hemispheres 8.2
2018 Male, age 76, both hemispheres 3.5
Perirhinal gyrus
nTPM: 11.3
2521 Female, age 94, right hemisphere 19.4
1847 Female, age 91, left hemisphere 13.6
1794 Male, age 80, right hemisphere 10.7
1841 Female, age 85, right hemisphere 7.3
2848 Male, age 76, right hemisphere 5.7
Subiculum
nTPM: 9.1
2619 Male, age 74, both hemispheres 16.2
2438 Female, age 94, left hemisphere 10.7
2729 Female, age 91, right hemisphere 9.4
1901 Male, age 80, both hemispheres 8.7
1977 Female, age 85, both hemispheres 7.3
2042 Male, age 76, both hemispheres 2.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.5
Samples: 197

Max nTPM: 97.1
Min nTPM: 1.6
Std nTPM: 16.7
Median nTPM: 32.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 97.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 90.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 76.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 72.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 72.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 66.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 62.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 57.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 57.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 56.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 56.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.5
FF:10153-102I9 76 years, female 68.4
FF:10169-103B7 60 years, female 60.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.9
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.2
Sample A Female 7.4
Sample B Female 9.2
Sample C Male 6.2
Sample D Male 8.9
Entorhinal cortex
nTPM: 11.4
Samples: 4

Max nTPM: 13.7
Min nTPM: 9.3
Sample A Female 10.4
Sample B Female 12.1
Sample C Male 9.3
Sample D Male 13.7
Subiculum
nTPM: 7.0
Samples: 4

Max nTPM: 10.1
Min nTPM: 5.6
Sample A Female 10.1
Sample B Female 5.7
Sample C Male 6.7
Sample D Male 5.6
Ventral hippocampus
nTPM: 7.1
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 6.6
Sample C Male 8.4
Sample D Male 8.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.5
Samples: 4

Max nTPM: 28.1
Min nTPM: 22.5
Sample A Male 28.1
Sample B Male 27.7
Sample C Female 23.6
Sample D Female 22.5
Hippocampal formation
nTPM: 22.1
Samples: 4

Max nTPM: 23.6
Min nTPM: 20.7
Sample A Male 20.7
Sample B Male 23.6
Sample C Female 21.5
Sample D Female 22.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.4
75831762 Antisense, RP_060601_02_D11, Mouse strain C57BL/6J (56 days, male) 15.4

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