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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.6 nTPM
HPA:57.6 nTPM
GTEx:17.5 nTPM
FANTOM5:65.3 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:14.9 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 25.7
1781 Male, age 74, unknown 35.0
2289 Male, age 61, right hemisphere 30.8
2846 Female, age 79, unknown 25.7
2288 Male, age 75, left hemisphere 24.7
2290 Female, age 72, unknown 23.9
1857 Female, age 85, left hemisphere 22.7
1854 Male, age 80, left hemisphere 22.0
2481 Female, age 94, left hemisphere 21.0
Claustrum
nTPM: 57.6
2645 Female, age 72, unknown 79.2
2568 Male, age 61, both hemispheres 64.7
2284 Female, age 91, both hemispheres 62.6
1956 Male, age 74, unknown 60.4
2198 Male, age 80, both hemispheres 56.8
2491 Male, age 75, both hemispheres 54.8
2196 Female, age 79, unknown 49.2
2292 Female, age 85, both hemispheres 46.4
2392 Female, age 94, both hemispheres 44.4
Globus pallidus, externus
nTPM: 20.6
2395 Male, age 75, both hemispheres 22.4
2646 Male, age 61, right hemisphere 21.6
2772 Female, age 79, unknown 20.6
2567 Female, age 72, unknown 20.0
1996 Male, age 80, right hemisphere 18.3
Globus pallidus, internus
nTPM: 19.6
2483 Female, age 94, right hemisphere 20.8
2287 Male, age 75, right hemisphere 20.6
2566 Female, age 72, unknown 20.4
2778 Female, age 91, both hemispheres 19.7
2037 Male, age 80, right hemisphere 18.9
2111 Female, age 85, right hemisphere 18.7
1818 Male, age 74, unknown 18.2
Nucleus accumbens
nTPM: 23.4
1783 Male, age 74, unknown 26.8
2732 Male, age 80, right hemisphere 25.6
2824 Male, age 61, right hemisphere 24.1
1856 Female, age 91, right hemisphere 24.0
2286 Male, age 75, left hemisphere 22.8
1806 Female, age 85, left hemisphere 22.3
2698 Female, age 72, unknown 22.0
2391 Female, age 94, left hemisphere 19.5
Nucleus basalis of Meynert
nTPM: 22.2
2821 Male, age 75, both hemispheres 23.4
2484 Female, age 94, left hemisphere 22.1
2569 Male, age 61, both hemispheres 21.7
2393 Male, age 80, right hemisphere 21.4
Nucleus of the diagonal band
nTPM: 54.6
2029 Male, age 61, right hemisphere 65.2
2775 Male, age 80, right hemisphere 65.1
2195 Female, age 85, both hemispheres 62.6
1812 Female, age 91, both hemispheres 56.0
1979 Male, age 74, unknown 24.2
Olfactory tubercle
nTPM: 56.0
1998 Female, age 91, both hemispheres 65.1
2487 Female, age 94, left hemisphere 54.7
1846 Male, age 80, right hemisphere 54.4
2856 Male, age 75, right hemisphere 49.7
Putamen
nTPM: 23.0
2466 Female, age 79, unknown 26.3
1829 Male, age 74, unknown 23.9
1937 Female, age 91, right hemisphere 23.8
1838 Male, age 80, right hemisphere 23.2
2647 Male, age 75, left hemisphere 22.4
2489 Female, age 72, unknown 20.8
2482 Female, age 94, left hemisphere 20.6
Septal nuclei
nTPM: 48.5
1960 Male, age 74, unknown 79.5
2031 Female, age 72, unknown 68.7
2009 Female, age 91, both hemispheres 53.5
2629 Female, age 94, right hemisphere 47.8
2059 Female, age 85, both hemispheres 40.4
2394 Male, age 61, left hemisphere 26.6
2199 Male, age 80, right hemisphere 23.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.5
Samples: 246

Max nTPM: 107.2
Min nTPM: 2.2
Std nTPM: 13.9
Median nTPM: 14.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 107.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 77.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 75.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 73.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 70.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 67.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 67.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 57.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 52.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 52.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 51.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.0
Samples: 246

Max nTPM: 83.0
Min nTPM: 1.8
Std nTPM: 10.4
Median nTPM: 13.7
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 83.0
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 81.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 78.9
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 54.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 49.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 49.3
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 45.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 44.7
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 39.3
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 38.4
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 30.9
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Brain - Putamen (basal ganglia)
Average nTPM: 10.2
Samples: 205

Max nTPM: 62.1
Min nTPM: 1.4
Std nTPM: 5.9
Median nTPM: 9.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 62.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 23.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 23.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 21.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 20.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 19.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 19.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 18.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 18.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 18.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 18.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.0
FF:10164-103B2 76 years, female 27.0
Globus pallidus
Scaled Tags Per Million: 6.4
FF:10175-103C4 60 years, female 11.0
FF:10161-103A8 76 years, female 1.8
Nucleus accumbens
Scaled Tags Per Million: 65.3
FF:10037-101F1 23-56 years, mixed 65.3
Putamen
Scaled Tags Per Million: 21.5
FF:10176-103C5 60 years, female 21.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.3
Pig sample Sample description nTPM
Caudate
nTPM: 8.0
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.9
Sample A Female 7.9
Sample B Female 8.5
Sample C Male 8.7
Sample D Male 6.9
Putamen
nTPM: 7.5
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.8
Sample A Female 8.5
Sample B Female 5.8
Sample C Male 7.7
Sample D Male 7.9
Septum
nTPM: 10.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.4
Sample A Female 10.5
Sample B Female 9.4
Sample C Male 10.8
Sample D Male 10.4
Ventral pallidum
nTPM: 9.0
Samples: 4

Max nTPM: 12.9
Min nTPM: 7.5
Sample A Female 7.5
Sample B Female 8.2
Sample C Male 12.9
Sample D Male 7.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.4
Samples: 4

Max nTPM: 10.5
Min nTPM: 1.6
Sample A Male 1.6
Sample B Male 2.2
Sample C Female 10.5
Sample D Female 7.2
Septum
nTPM: 14.9
Samples: 4

Max nTPM: 23.2
Min nTPM: 10.4
Sample A Male 23.2
Sample B Male 10.7
Sample C Female 15.4
Sample D Female 10.4
Ventral forebrain
nTPM: 12.7
Samples: 4

Max nTPM: 14.2
Min nTPM: 9.3
Sample A Male 14.2
Sample B Male 9.3
Sample C Female 13.2
Sample D Female 14.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
76135829 Antisense, RP_060518_01_A10, Mouse strain C57BL/6J (56 days, male) 0.4
68861994 Antisense, RP_050301_01_C08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.3
76135829 Antisense, RP_060518_01_A10, Mouse strain C57BL/6J (56 days, male) 0.5
68861994 Antisense, RP_050301_01_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.