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ATPSCKMT
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA:13.0 nTPM
GTEx:9.1 nTPM
FANTOM5:19.7 Scaled Tags Per Million
Pig:2.3 nTPM
Mouse:8.2 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.2
2290 Female, age 72, unknown 12.2
1854 Male, age 80, left hemisphere 12.0
1857 Female, age 85, left hemisphere 11.7
2289 Male, age 61, right hemisphere 11.3
2288 Male, age 75, left hemisphere 11.2
2846 Female, age 79, unknown 11.1
2481 Female, age 94, left hemisphere 10.6
1781 Male, age 74, unknown 9.8
Claustrum
nTPM: 12.0
2392 Female, age 94, both hemispheres 14.0
2491 Male, age 75, both hemispheres 12.7
2645 Female, age 72, unknown 12.4
2196 Female, age 79, unknown 12.1
2568 Male, age 61, both hemispheres 11.9
2284 Female, age 91, both hemispheres 11.7
2198 Male, age 80, both hemispheres 11.3
1956 Male, age 74, unknown 11.2
2292 Female, age 85, both hemispheres 10.7
Globus pallidus, externus
nTPM: 12.6
2395 Male, age 75, both hemispheres 13.4
2646 Male, age 61, right hemisphere 13.3
2567 Female, age 72, unknown 12.6
1996 Male, age 80, right hemisphere 12.1
2772 Female, age 79, unknown 11.9
Globus pallidus, internus
nTPM: 13.0
2483 Female, age 94, right hemisphere 13.9
2287 Male, age 75, right hemisphere 13.8
2111 Female, age 85, right hemisphere 13.3
2778 Female, age 91, both hemispheres 13.3
2037 Male, age 80, right hemisphere 12.4
2566 Female, age 72, unknown 12.4
1818 Male, age 74, unknown 12.0
Nucleus accumbens
nTPM: 11.8
2391 Female, age 94, left hemisphere 13.5
2698 Female, age 72, unknown 12.8
2732 Male, age 80, right hemisphere 12.2
1856 Female, age 91, right hemisphere 11.5
2824 Male, age 61, right hemisphere 11.4
1806 Female, age 85, left hemisphere 11.3
2286 Male, age 75, left hemisphere 11.2
1783 Male, age 74, unknown 10.6
Nucleus basalis of Meynert
nTPM: 12.3
2569 Male, age 61, both hemispheres 13.0
2484 Female, age 94, left hemisphere 12.3
2393 Male, age 80, right hemisphere 12.2
2821 Male, age 75, both hemispheres 11.7
Nucleus of the diagonal band
nTPM: 11.6
1979 Male, age 74, unknown 12.3
2775 Male, age 80, right hemisphere 11.7
2195 Female, age 85, both hemispheres 11.6
2029 Male, age 61, right hemisphere 11.5
1812 Female, age 91, both hemispheres 10.7
Olfactory tubercle
nTPM: 11.6
1998 Female, age 91, both hemispheres 11.8
2856 Male, age 75, right hemisphere 11.8
2487 Female, age 94, left hemisphere 11.5
1846 Male, age 80, right hemisphere 11.2
Putamen
nTPM: 11.8
1838 Male, age 80, right hemisphere 12.4
2647 Male, age 75, left hemisphere 12.1
1829 Male, age 74, unknown 11.9
1937 Female, age 91, right hemisphere 11.8
2489 Female, age 72, unknown 11.7
2466 Female, age 79, unknown 11.5
2482 Female, age 94, left hemisphere 10.8
Septal nuclei
nTPM: 11.8
2199 Male, age 80, right hemisphere 12.5
2009 Female, age 91, both hemispheres 12.1
2059 Female, age 85, both hemispheres 12.1
2394 Male, age 61, left hemisphere 12.1
2031 Female, age 72, unknown 11.8
1960 Male, age 74, unknown 11.2
2629 Female, age 94, right hemisphere 11.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.1
Samples: 246

Max nTPM: 19.1
Min nTPM: 4.7
Std nTPM: 2.3
Median nTPM: 8.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 19.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 18.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 17.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 17.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 15.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 14.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 14.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 14.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 14.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 14.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 13.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.6
Samples: 246

Max nTPM: 20.4
Min nTPM: 3.1
Std nTPM: 2.3
Median nTPM: 8.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 20.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 16.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 15.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 14.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 14.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 14.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 14.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 13.9
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 13.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 13.6
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 12.9
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Brain - Putamen (basal ganglia)
Average nTPM: 8.9
Samples: 205

Max nTPM: 16.5
Min nTPM: 4.2
Std nTPM: 2.3
Median nTPM: 8.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 16.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 16.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 14.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 14.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 14.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 14.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 14.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 14.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 14.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 13.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 13.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.7
FF:10164-103B2 76 years, female 19.7
Globus pallidus
Scaled Tags Per Million: 18.5
FF:10161-103A8 76 years, female 19.6
FF:10175-103C4 60 years, female 17.3
Nucleus accumbens
Scaled Tags Per Million: 13.9
FF:10037-101F1 23-56 years, mixed 13.9
Putamen
Scaled Tags Per Million: 18.7
FF:10176-103C5 60 years, female 18.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.3
Pig sample Sample description nTPM
Caudate
nTPM: 2.0
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.8
Sample A Female 2.1
Sample B Female 2.1
Sample C Male 2.1
Sample D Male 1.8
Putamen
nTPM: 2.3
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.9
Sample A Female 2.7
Sample B Female 2.0
Sample C Male 2.4
Sample D Male 1.9
Septum
nTPM: 2.2
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.0
Sample A Female 2.7
Sample B Female 2.1
Sample C Male 2.1
Sample D Male 2.0
Ventral pallidum
nTPM: 2.3
Samples: 4

Max nTPM: 2.5
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 2.2
Sample C Male 2.4
Sample D Male 2.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.2
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.1
Sample A Male 7.7
Sample B Male 7.5
Sample C Female 7.1
Sample D Female 10.4
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 6.6
Min nTPM: 3.5
Sample A Male 4.6
Sample B Male 3.5
Sample C Female 6.6
Sample D Female 5.6
Ventral forebrain
nTPM: 7.0
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.4
Sample A Male 6.5
Sample B Male 6.4
Sample C Female 6.8
Sample D Female 8.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
532757 Antisense, RP_040825_02_B08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
532757 Antisense, RP_040825_02_B08, Mouse strain C57BL/6J (56 days, male) 0.0

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