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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA:26.1 nTPM
GTEx:35.9 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:49.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.8
2411 Female, age 72, unknown 22.5
2219 Male, age 76, both hemispheres 21.6
1870 Female, age 42, unknown 20.9
1833 Male, age 53, unknown 20.2
1830 Male, age 51, unknown 19.2
1827 Male, age 72, unknown 18.0
2019 Male, age 18, unknown 17.6
2828 Female, age 72, unknown 16.7
2666 Male, age 74, left hemisphere 16.3
2586 Male, age 75, left hemisphere 15.4
Dorsal raphe nucleus
nTPM: 21.9
2750 Male, age 76, both hemispheres 24.1
2047 Male, age 72, unknown 23.2
2298 Female, age 72, unknown 21.9
1828 Male, age 53, unknown 20.9
2016 Female, age 72, unknown 19.3
Inferior colliculus
nTPM: 19.4
1848 Female, age 42, unknown 19.8
2097 Female, age 72, unknown 19.5
2849 Male, age 72, unknown 19.3
1890 Male, age 53, unknown 19.2
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Pedunculopontine tegmental nucleus
nTPM: 21.6
2334 Male, age 80, both hemispheres 24.0
1921 Female, age 85, both hemispheres 22.3
2338 Male, age 61, both hemispheres 18.5
Periaquaductal grey, anterior
nTPM: 18.5
1947 Male, age 18, unknown 20.6
2502 Female, age 75, unknown 18.6
1795 Male, age 51, unknown 16.3
Periaquaductal grey, dorsal
nTPM: 19.2
1840 Male, age 53, unknown 20.3
2464 Female, age 72, unknown 20.1
2850 Male, age 76, both hemispheres 19.8
1831 Male, age 72, unknown 16.5
Periaquaductal grey, lateral
nTPM: 17.9
2272 Male, age 74, both hemispheres 18.2
2053 Male, age 18, unknown 17.7
2140 Male, age 76, both hemispheres 17.7
Pretectal area
nTPM: 18.0
2224 Female, age 72, unknown 21.4
2825 Male, age 18, unknown 19.4
2667 Female, age 75, unknown 18.9
1817 Female, age 42, unknown 18.3
2273 Male, age 74, both hemispheres 18.3
2007 Male, age 72, unknown 17.9
2316 Male, age 76, right hemisphere 17.8
1815 Male, age 53, unknown 17.2
1944 Female, age 72, unknown 16.4
1816 Male, age 51, unknown 16.3
2407 Male, age 75, both hemispheres 16.2
Red nucleus
nTPM: 18.8
1821 Female, age 72, unknown 22.7
2823 Male, age 76, right hemisphere 19.6
2769 Male, age 72, unknown 19.3
2227 Male, age 72, unknown 19.2
1904 Male, age 53, unknown 19.1
1865 Male, age 51, unknown 18.6
1954 Female, age 42, unknown 18.4
2725 Female, age 75, unknown 18.4
2503 Female, age 72, unknown 18.3
2584 Male, age 75, left hemisphere 17.7
2588 Male, age 74, left hemisphere 17.4
2785 Male, age 18, unknown 16.8
Substantia nigra
nTPM: 21.2
2241 Male, age 72, unknown 30.2
1916 Female, age 42, unknown 24.5
1851 Male, age 51, unknown 22.6
2699 Male, age 18, unknown 21.1
1941 Male, age 53, unknown 20.7
1889 Female, age 72, unknown 20.2
2409 Female, age 72, unknown 19.5
2590 Female, age 75, unknown 18.7
2665 Male, age 74, both hemispheres 18.0
2583 Male, age 75, right hemisphere 16.7
Superior colliculus
nTPM: 17.6
1895 Male, age 76, right hemisphere 22.1
1839 Male, age 51, unknown 19.6
2587 Male, age 74, left hemisphere 19.3
2668 Female, age 75, unknown 17.7
2087 Female, age 72, unknown 17.2
1796 Male, age 53, unknown 17.0
2261 Male, age 18, unknown 16.7
1913 Female, age 42, unknown 16.4
1995 Male, age 72, unknown 14.8
2664 Male, age 75, both hemispheres 14.8
Ventral tegmental area
nTPM: 20.9
1915 Female, age 42, unknown 22.1
2410 Female, age 72, unknown 21.5
1942 Male, age 51, unknown 20.9
2218 Male, age 76, both hemispheres 20.9
2223 Female, age 72, unknown 20.5
2021 Male, age 53, unknown 19.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.9
Samples: 139

Max nTPM: 97.0
Min nTPM: 9.3
Std nTPM: 15.3
Median nTPM: 35.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 75.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 70.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 69.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 64.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 61.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 60.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 60.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 58.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 58.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 14.2
Min nTPM: 12.7
Sample A Female 13.0
Sample B Female 12.7
Sample C Male 14.0
Sample D Male 14.2
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 15.0
Min nTPM: 11.5
Sample B Female 11.5
Sample C Male 15.0
Sample D Male 11.7
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.2
Sample A Female 17.3
Sample B Female 14.7
Sample C Male 16.6
Sample D Male 13.2
Superior colliculi
nTPM: 13.7
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.1
Sample A Female 12.8
Sample B Female 12.1
Sample C Male 16.2
Sample D Male 13.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 53.1
Min nTPM: 45.8
Sample A Male 53.1
Sample B Male 49.4
Sample C Female 45.8
Sample D Female 50.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68148753 Antisense, RP_041116_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
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