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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:26.5 nTPM
HPA:26.5 nTPM
GTEx:28.5 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:42.7 nTPM
Allen mouse:4.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018116
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.5
Sample id Sample description nTPM
Hippocampus
nTPM: 26.4
1898 Male, age 80, left hemisphere 28.4
1911 Female, age 85, right hemisphere 28.3
1855 Male, age 76, left hemisphere 27.1
2529 Female, age 94, left hemisphere 27.1
2148 Female, age 91, left hemisphere 24.2
2621 Female, age 67, right hemisphere 23.5
Dentate gyrus
nTPM: 26.0
2010 Male, age 76, both hemispheres 27.5
2530 Female, age 94, left hemisphere 27.3
2528 Male, age 74, both hemispheres 27.2
2246 Female, age 85, both hemispheres 26.6
1927 Female, age 91, both hemispheres 25.5
2531 Female, age 67, both hemispheres 21.8
Entorhinal gyrus
nTPM: 25.0
1938 Female, age 85, left hemisphere 28.0
2117 Female, age 91, right hemisphere 27.9
1787 Male, age 76, left hemisphere 25.7
2686 Male, age 75, right hemisphere 23.8
2764 Male, age 80, right hemisphere 23.6
2613 Female, age 94, left hemisphere 21.0
Hippocampus, CA1
nTPM: 26.2
1873 Female, age 85, both hemispheres 27.5
2749 Male, age 80, left hemisphere 27.1
2527 Male, age 74, both hemispheres 26.6
2045 Male, age 76, both hemispheres 25.4
2082 Female, age 91, right hemisphere 24.3
Hippocampus, CA2
nTPM: 25.9
2249 Male, age 74, both hemispheres 28.2
1892 Male, age 76, both hemispheres 26.1
1940 Female, age 85, left hemisphere 25.4
2113 Female, age 91, right hemisphere 25.4
2437 Female, age 94, left hemisphere 25.3
1963 Male, age 80, left hemisphere 25.1
Hippocampus, CA3
nTPM: 25.4
1891 Female, age 85, both hemispheres 29.6
2137 Male, age 80, left hemisphere 27.8
1867 Male, age 76, both hemispheres 27.1
2436 Male, age 74, both hemispheres 26.7
2861 Female, age 67, both hemispheres 20.6
2620 Female, age 94, left hemisphere 20.5
Parahippocampal cortex
nTPM: 25.6
2018 Male, age 76, both hemispheres 27.5
1850 Male, age 80, both hemispheres 27.3
2692 Male, age 74, both hemispheres 26.5
2250 Female, age 67, right hemisphere 26.2
1933 Female, age 85, both hemispheres 26.1
1990 Female, age 91, right hemisphere 26.1
2245 Female, age 91, both hemispheres 24.9
2693 Female, age 94, both hemispheres 24.9
2532 Female, age 72, left hemisphere 24.7
2622 Female, age 67, right hemisphere 22.2
Perirhinal gyrus
nTPM: 25.8
1841 Female, age 85, right hemisphere 27.1
1794 Male, age 80, right hemisphere 26.1
2521 Female, age 94, right hemisphere 26.1
1847 Female, age 91, left hemisphere 24.8
2848 Male, age 76, right hemisphere 24.8
Subiculum
nTPM: 26.5
1901 Male, age 80, both hemispheres 28.3
2042 Male, age 76, both hemispheres 28.3
1977 Female, age 85, both hemispheres 26.5
2729 Female, age 91, right hemisphere 26.1
2438 Female, age 94, left hemisphere 25.3
2619 Male, age 74, both hemispheres 24.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.5
Samples: 197

Max nTPM: 55.7
Min nTPM: 14.9
Std nTPM: 7.1
Median nTPM: 26.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 55.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 51.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 48.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 48.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 47.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 47.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 45.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 44.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 43.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 42.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 40.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.2
FF:10153-102I9 76 years, female 15.9
FF:10169-103B7 60 years, female 14.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 17.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 13.9
Sample A Female 19.4
Sample B Female 16.0
Sample C Male 20.7
Sample D Male 13.9
Entorhinal cortex
nTPM: 15.6
Samples: 4

Max nTPM: 19.4
Min nTPM: 12.4
Sample A Female 15.3
Sample B Female 19.4
Sample C Male 15.2
Sample D Male 12.4
Subiculum
nTPM: 16.6
Samples: 4

Max nTPM: 19.8
Min nTPM: 15.1
Sample A Female 19.8
Sample B Female 15.5
Sample C Male 15.1
Sample D Male 15.8
Ventral hippocampus
nTPM: 13.7
Samples: 4

Max nTPM: 14.8
Min nTPM: 11.3
Sample A Female 14.3
Sample B Female 14.4
Sample C Male 11.3
Sample D Male 14.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.7
Samples: 4

Max nTPM: 39.8
Min nTPM: 34.5
Sample A Male 37.9
Sample B Male 34.5
Sample C Female 39.8
Sample D Female 34.5
Hippocampal formation
nTPM: 42.7
Samples: 4

Max nTPM: 43.2
Min nTPM: 41.9
Sample A Male 43.1
Sample B Male 42.6
Sample C Female 43.2
Sample D Female 41.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.5
513228 Antisense, RP_040810_01_C04, Mouse strain C57BL/6J (56 days, male) 16.7
70566130 Antisense, RP_050628_02_D03, Mouse strain C57BL/6J (56 days, male) 0.9
73931418 Antisense, RP_051214_04_E10, Mouse strain C57BL/6J (56 days, male) 0.3
80342061 Antisense, RP_071204_04_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.