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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:117.1 nTPM
HPA:117.1 nTPM
GTEx:172.7 nTPM
FANTOM5:126.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 117.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.9
2411 Female, age 72, unknown 120.3
2019 Male, age 18, unknown 116.1
1870 Female, age 42, unknown 114.3
2219 Male, age 76, both hemispheres 112.1
1827 Male, age 72, unknown 106.3
2586 Male, age 75, left hemisphere 104.7
1833 Male, age 53, unknown 103.2
2828 Female, age 72, unknown 102.8
1830 Male, age 51, unknown 99.9
2666 Male, age 74, left hemisphere 89.4
Dorsal raphe nucleus
nTPM: 117.1
2298 Female, age 72, unknown 137.2
2047 Male, age 72, unknown 123.2
2750 Male, age 76, both hemispheres 110.7
1828 Male, age 53, unknown 108.5
2016 Female, age 72, unknown 105.8
Inferior colliculus
nTPM: 110.5
2097 Female, age 72, unknown 117.6
1890 Male, age 53, unknown 113.3
1848 Female, age 42, unknown 109.2
2849 Male, age 72, unknown 101.9
Median raphe nucleus
nTPM: 109.8
2220 Male, age 76, midline 109.8
Pedunculopontine tegmental nucleus
nTPM: 115.9
1921 Female, age 85, both hemispheres 122.7
2334 Male, age 80, both hemispheres 115.9
2338 Male, age 61, both hemispheres 109.1
Periaquaductal grey, anterior
nTPM: 111.1
1795 Male, age 51, unknown 112.2
1947 Male, age 18, unknown 112.0
2502 Female, age 75, unknown 109.3
Periaquaductal grey, dorsal
nTPM: 104.4
1840 Male, age 53, unknown 110.2
2850 Male, age 76, both hemispheres 103.7
1831 Male, age 72, unknown 102.4
2464 Female, age 72, unknown 101.1
Periaquaductal grey, lateral
nTPM: 105.5
2272 Male, age 74, both hemispheres 116.3
2053 Male, age 18, unknown 105.7
2140 Male, age 76, both hemispheres 94.4
Pretectal area
nTPM: 111.4
2224 Female, age 72, unknown 121.1
2007 Male, age 72, unknown 119.1
1944 Female, age 72, unknown 117.8
1817 Female, age 42, unknown 117.3
2273 Male, age 74, both hemispheres 115.8
2667 Female, age 75, unknown 112.0
1816 Male, age 51, unknown 111.1
1815 Male, age 53, unknown 107.4
2407 Male, age 75, both hemispheres 101.7
2825 Male, age 18, unknown 100.9
2316 Male, age 76, right hemisphere 100.7
Red nucleus
nTPM: 108.0
1821 Female, age 72, unknown 118.2
2725 Female, age 75, unknown 116.9
2785 Male, age 18, unknown 111.1
1954 Female, age 42, unknown 110.5
2503 Female, age 72, unknown 110.2
1904 Male, age 53, unknown 109.6
2227 Male, age 72, unknown 108.7
2769 Male, age 72, unknown 107.5
1865 Male, age 51, unknown 106.5
2823 Male, age 76, right hemisphere 101.8
2584 Male, age 75, left hemisphere 99.0
2588 Male, age 74, left hemisphere 96.0
Substantia nigra
nTPM: 109.4
1916 Female, age 42, unknown 127.2
1889 Female, age 72, unknown 120.6
1851 Male, age 51, unknown 119.4
1941 Male, age 53, unknown 116.8
2409 Female, age 72, unknown 107.8
2241 Male, age 72, unknown 105.5
2590 Female, age 75, unknown 104.0
2699 Male, age 18, unknown 101.1
2583 Male, age 75, right hemisphere 97.8
2665 Male, age 74, both hemispheres 93.6
Superior colliculus
nTPM: 103.9
1895 Male, age 76, right hemisphere 112.3
2587 Male, age 74, left hemisphere 111.2
1796 Male, age 53, unknown 107.1
2261 Male, age 18, unknown 106.7
2087 Female, age 72, unknown 105.6
1913 Female, age 42, unknown 104.0
1995 Male, age 72, unknown 102.8
2668 Female, age 75, unknown 100.5
1839 Male, age 51, unknown 99.8
2664 Male, age 75, both hemispheres 89.2
Ventral tegmental area
nTPM: 112.7
2410 Female, age 72, unknown 121.7
1915 Female, age 42, unknown 116.7
1942 Male, age 51, unknown 113.6
2218 Male, age 76, both hemispheres 110.6
2223 Female, age 72, unknown 110.1
2021 Male, age 53, unknown 103.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 172.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 172.7
Samples: 139

Max nTPM: 308.9
Min nTPM: 96.2
Std nTPM: 35.5
Median nTPM: 167.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 308.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 271.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 257.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 253.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 251.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 249.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 249.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 248.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 245.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 238.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 236.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.9
FF:10158-103A5 76 years, female 126.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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