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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:39.5 nTPM
HPA:39.5 nTPM
GTEx:32.0 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:16.3 nTPM
Mouse:29.5 nTPM
Allen mouse:0.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015520Antibody HPA018193
Glial cells HighLow
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Hippocampus
nTPM: 37.3
2529 Female, age 94, left hemisphere 40.7
1898 Male, age 80, left hemisphere 39.7
1911 Female, age 85, right hemisphere 39.2
2621 Female, age 67, right hemisphere 35.0
1855 Male, age 76, left hemisphere 34.6
2148 Female, age 91, left hemisphere 34.4
Dentate gyrus
nTPM: 36.3
2530 Female, age 94, left hemisphere 46.9
2010 Male, age 76, both hemispheres 45.0
2528 Male, age 74, both hemispheres 33.7
2531 Female, age 67, both hemispheres 32.8
2246 Female, age 85, both hemispheres 31.0
1927 Female, age 91, both hemispheres 28.4
Entorhinal gyrus
nTPM: 38.0
2117 Female, age 91, right hemisphere 47.2
2764 Male, age 80, right hemisphere 41.2
2686 Male, age 75, right hemisphere 41.0
1938 Female, age 85, left hemisphere 33.5
2613 Female, age 94, left hemisphere 33.5
1787 Male, age 76, left hemisphere 31.8
Hippocampus, CA1
nTPM: 31.0
2082 Female, age 91, right hemisphere 34.0
2527 Male, age 74, both hemispheres 33.8
1873 Female, age 85, both hemispheres 32.2
2045 Male, age 76, both hemispheres 29.0
2749 Male, age 80, left hemisphere 26.1
Hippocampus, CA2
nTPM: 36.2
2249 Male, age 74, both hemispheres 42.0
1963 Male, age 80, left hemisphere 38.8
2437 Female, age 94, left hemisphere 38.7
2113 Female, age 91, right hemisphere 35.7
1940 Female, age 85, left hemisphere 35.1
1892 Male, age 76, both hemispheres 27.1
Hippocampus, CA3
nTPM: 30.0
1891 Female, age 85, both hemispheres 39.4
1867 Male, age 76, both hemispheres 31.6
2861 Female, age 67, both hemispheres 30.0
2620 Female, age 94, left hemisphere 27.7
2436 Male, age 74, both hemispheres 26.9
2137 Male, age 80, left hemisphere 24.9
Parahippocampal cortex
nTPM: 33.5
2018 Male, age 76, both hemispheres 38.6
2692 Male, age 74, both hemispheres 37.0
1990 Female, age 91, right hemisphere 36.9
2532 Female, age 72, left hemisphere 35.5
1933 Female, age 85, both hemispheres 33.4
1850 Male, age 80, both hemispheres 33.3
2622 Female, age 67, right hemisphere 32.5
2245 Female, age 91, both hemispheres 32.3
2693 Female, age 94, both hemispheres 27.9
2250 Female, age 67, right hemisphere 27.8
Perirhinal gyrus
nTPM: 28.5
2848 Male, age 76, right hemisphere 30.3
1847 Female, age 91, left hemisphere 29.6
1794 Male, age 80, right hemisphere 28.3
1841 Female, age 85, right hemisphere 27.8
2521 Female, age 94, right hemisphere 26.6
Subiculum
nTPM: 39.5
2042 Male, age 76, both hemispheres 46.7
2729 Female, age 91, right hemisphere 41.0
1977 Female, age 85, both hemispheres 40.0
1901 Male, age 80, both hemispheres 39.8
2438 Female, age 94, left hemisphere 35.2
2619 Male, age 74, both hemispheres 34.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.0
Samples: 197

Max nTPM: 104.0
Min nTPM: 6.4
Std nTPM: 16.7
Median nTPM: 28.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 104.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 94.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 90.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 86.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 84.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 79.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 75.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 68.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 67.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 64.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 63.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 100.4
FF:10153-102I9 76 years, female 108.7
FF:10169-103B7 60 years, female 92.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 14.4
Samples: 4

Max nTPM: 17.3
Min nTPM: 11.3
Sample A Female 17.3
Sample B Female 13.4
Sample C Male 15.4
Sample D Male 11.3
Entorhinal cortex
nTPM: 12.4
Samples: 4

Max nTPM: 14.2
Min nTPM: 8.7
Sample A Female 12.8
Sample B Female 14.2
Sample C Male 13.7
Sample D Male 8.7
Subiculum
nTPM: 16.4
Samples: 4

Max nTPM: 17.0
Min nTPM: 15.8
Sample A Female 16.1
Sample B Female 15.8
Sample C Male 17.0
Sample D Male 16.5
Ventral hippocampus
nTPM: 15.5
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.5
Sample A Female 15.6
Sample B Female 15.3
Sample C Male 18.5
Sample D Male 12.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.5
Samples: 4

Max nTPM: 31.0
Min nTPM: 28.0
Sample A Male 31.0
Sample B Male 28.0
Sample C Female 30.8
Sample D Female 28.2
Hippocampal formation
nTPM: 28.5
Samples: 4

Max nTPM: 30.3
Min nTPM: 27.1
Sample A Male 30.3
Sample B Male 27.1
Sample C Female 29.5
Sample D Female 27.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
72339542 Antisense, RP_050725_01_H03, Mouse strain C57BL/6J (56 days, male) 1.4
678711 Antisense, RP_040914_02_G02, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.