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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:36.2 nTPM
HPA:36.2 nTPM
GTEx:36.9 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:8.1 nTPM
Allen mouse:4.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036698Antibody HPA036699
Glial cells Not detectedLow
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.2
Sample id Sample description nTPM
Hippocampus
nTPM: 33.9
1898 Male, age 80, left hemisphere 36.9
1855 Male, age 76, left hemisphere 34.8
2621 Female, age 67, right hemisphere 33.9
1911 Female, age 85, right hemisphere 33.7
2529 Female, age 94, left hemisphere 32.2
2148 Female, age 91, left hemisphere 31.8
Dentate gyrus
nTPM: 34.8
2530 Female, age 94, left hemisphere 38.3
2010 Male, age 76, both hemispheres 37.6
2246 Female, age 85, both hemispheres 35.0
2528 Male, age 74, both hemispheres 33.8
1927 Female, age 91, both hemispheres 32.8
2531 Female, age 67, both hemispheres 31.1
Entorhinal gyrus
nTPM: 35.8
2117 Female, age 91, right hemisphere 37.5
2764 Male, age 80, right hemisphere 37.4
2613 Female, age 94, left hemisphere 36.2
2686 Male, age 75, right hemisphere 35.3
1787 Male, age 76, left hemisphere 34.1
1938 Female, age 85, left hemisphere 33.9
Hippocampus, CA1
nTPM: 33.1
2749 Male, age 80, left hemisphere 35.6
2527 Male, age 74, both hemispheres 35.3
1873 Female, age 85, both hemispheres 34.0
2045 Male, age 76, both hemispheres 31.4
2082 Female, age 91, right hemisphere 29.4
Hippocampus, CA2
nTPM: 34.5
2249 Male, age 74, both hemispheres 35.9
1963 Male, age 80, left hemisphere 35.6
1892 Male, age 76, both hemispheres 35.2
2437 Female, age 94, left hemisphere 34.0
1940 Female, age 85, left hemisphere 33.8
2113 Female, age 91, right hemisphere 32.4
Hippocampus, CA3
nTPM: 32.8
1891 Female, age 85, both hemispheres 35.9
2137 Male, age 80, left hemisphere 33.7
1867 Male, age 76, both hemispheres 33.5
2620 Female, age 94, left hemisphere 32.6
2861 Female, age 67, both hemispheres 31.1
2436 Male, age 74, both hemispheres 29.9
Parahippocampal cortex
nTPM: 33.7
2692 Male, age 74, both hemispheres 35.9
1990 Female, age 91, right hemisphere 35.8
2532 Female, age 72, left hemisphere 34.8
1850 Male, age 80, both hemispheres 34.3
1933 Female, age 85, both hemispheres 34.2
2245 Female, age 91, both hemispheres 34.0
2622 Female, age 67, right hemisphere 33.0
2018 Male, age 76, both hemispheres 32.7
2693 Female, age 94, both hemispheres 31.3
2250 Female, age 67, right hemisphere 30.7
Perirhinal gyrus
nTPM: 32.6
1794 Male, age 80, right hemisphere 33.3
1841 Female, age 85, right hemisphere 32.8
2521 Female, age 94, right hemisphere 32.6
2848 Male, age 76, right hemisphere 32.4
1847 Female, age 91, left hemisphere 31.8
Subiculum
nTPM: 36.2
2042 Male, age 76, both hemispheres 40.7
1901 Male, age 80, both hemispheres 37.1
1977 Female, age 85, both hemispheres 35.9
2438 Female, age 94, left hemisphere 35.5
2619 Male, age 74, both hemispheres 35.3
2729 Female, age 91, right hemisphere 32.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.9
Samples: 197

Max nTPM: 86.7
Min nTPM: 18.1
Std nTPM: 10.2
Median nTPM: 35.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 86.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 75.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 64.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 63.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 60.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 57.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 57.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 56.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 56.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 55.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 54.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.6
FF:10169-103B7 60 years, female 43.9
FF:10153-102I9 76 years, female 37.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 8.8
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.9
Sample A Female 10.5
Sample B Female 9.1
Sample C Male 6.9
Sample D Male 8.8
Entorhinal cortex
nTPM: 7.1
Samples: 4

Max nTPM: 7.6
Min nTPM: 5.9
Sample A Female 7.6
Sample B Female 7.5
Sample C Male 5.9
Sample D Male 7.4
Subiculum
nTPM: 6.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.2
Sample A Female 7.7
Sample B Female 5.2
Sample C Male 5.5
Sample D Male 6.2
Ventral hippocampus
nTPM: 7.2
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.7
Sample A Female 7.0
Sample B Female 5.7
Sample C Male 7.9
Sample D Male 8.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 8.6
Sample C Female 7.9
Sample D Female 8.3
Hippocampal formation
nTPM: 7.7
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.0
Sample A Male 9.3
Sample B Male 7.2
Sample C Female 7.4
Sample D Female 7.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.5
67870434 Antisense, RP_041018_01_D03, Mouse strain C57BL/6J (56 days, male) 4.9
248565 Antisense, RP_040609_01_A07, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.