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MFSD6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:35.5 nTPM
HPA:35.5 nTPM
GTEx:33.5 nTPM
FANTOM5:65.2 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:40.3 nTPM
Allen mouse:7.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022274
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 35.5
Sample id Sample description nTPM
Hippocampus
nTPM: 17.7
1898 Male, age 80, left hemisphere 31.8
1855 Male, age 76, left hemisphere 20.2
2621 Female, age 67, right hemisphere 20.0
1911 Female, age 85, right hemisphere 14.6
2148 Female, age 91, left hemisphere 11.1
2529 Female, age 94, left hemisphere 8.3
Dentate gyrus
nTPM: 17.6
2530 Female, age 94, left hemisphere 27.5
2010 Male, age 76, both hemispheres 22.7
1927 Female, age 91, both hemispheres 18.8
2528 Male, age 74, both hemispheres 14.2
2246 Female, age 85, both hemispheres 12.3
2531 Female, age 67, both hemispheres 10.4
Entorhinal gyrus
nTPM: 35.5
2613 Female, age 94, left hemisphere 60.3
2764 Male, age 80, right hemisphere 44.7
1938 Female, age 85, left hemisphere 35.9
1787 Male, age 76, left hemisphere 28.5
2117 Female, age 91, right hemisphere 22.7
2686 Male, age 75, right hemisphere 20.8
Hippocampus, CA1
nTPM: 19.6
2749 Male, age 80, left hemisphere 40.6
1873 Female, age 85, both hemispheres 19.7
2527 Male, age 74, both hemispheres 16.8
2082 Female, age 91, right hemisphere 11.1
2045 Male, age 76, both hemispheres 9.8
Hippocampus, CA2
nTPM: 24.4
1892 Male, age 76, both hemispheres 33.5
1940 Female, age 85, left hemisphere 29.1
1963 Male, age 80, left hemisphere 28.6
2249 Male, age 74, both hemispheres 23.5
2437 Female, age 94, left hemisphere 20.6
2113 Female, age 91, right hemisphere 10.9
Hippocampus, CA3
nTPM: 16.6
1867 Male, age 76, both hemispheres 24.5
2137 Male, age 80, left hemisphere 23.8
1891 Female, age 85, both hemispheres 22.2
2620 Female, age 94, left hemisphere 12.3
2436 Male, age 74, both hemispheres 8.9
2861 Female, age 67, both hemispheres 7.7
Parahippocampal cortex
nTPM: 24.8
1850 Male, age 80, both hemispheres 42.7
1990 Female, age 91, right hemisphere 36.5
1933 Female, age 85, both hemispheres 31.1
2693 Female, age 94, both hemispheres 30.1
2532 Female, age 72, left hemisphere 25.2
2622 Female, age 67, right hemisphere 21.2
2245 Female, age 91, both hemispheres 19.6
2692 Male, age 74, both hemispheres 17.9
2018 Male, age 76, both hemispheres 13.7
2250 Female, age 67, right hemisphere 10.4
Perirhinal gyrus
nTPM: 35.5
1847 Female, age 91, left hemisphere 43.6
1794 Male, age 80, right hemisphere 40.0
2521 Female, age 94, right hemisphere 35.5
1841 Female, age 85, right hemisphere 29.7
2848 Male, age 76, right hemisphere 29.0
Subiculum
nTPM: 23.0
1901 Male, age 80, both hemispheres 34.1
1977 Female, age 85, both hemispheres 32.8
2619 Male, age 74, both hemispheres 21.4
2042 Male, age 76, both hemispheres 20.7
2438 Female, age 94, left hemisphere 18.9
2729 Female, age 91, right hemisphere 10.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.5
Samples: 197

Max nTPM: 60.6
Min nTPM: 5.3
Std nTPM: 10.1
Median nTPM: 33.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 60.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 58.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 57.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 57.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 54.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 53.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 52.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 52.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 51.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 49.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 49.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 65.2
FF:10169-103B7 60 years, female 66.9
FF:10153-102I9 76 years, female 63.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.3
Samples: 4

Max nTPM: 45.1
Min nTPM: 30.2
Sample A Female 45.1
Sample B Female 39.2
Sample C Male 38.7
Sample D Male 30.2
Entorhinal cortex
nTPM: 25.4
Samples: 4

Max nTPM: 27.5
Min nTPM: 22.6
Sample A Female 26.9
Sample B Female 22.6
Sample C Male 27.5
Sample D Male 24.4
Subiculum
nTPM: 28.2
Samples: 4

Max nTPM: 32.6
Min nTPM: 22.7
Sample A Female 32.6
Sample B Female 22.7
Sample C Male 29.1
Sample D Male 28.3
Ventral hippocampus
nTPM: 30.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 24.1
Sample A Female 28.1
Sample B Female 24.1
Sample C Male 32.0
Sample D Male 35.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.4
Samples: 4

Max nTPM: 48.4
Min nTPM: 37.1
Sample A Male 38.7
Sample B Male 37.1
Sample C Female 37.2
Sample D Female 48.4
Hippocampal formation
nTPM: 39.5
Samples: 4

Max nTPM: 47.2
Min nTPM: 33.2
Sample A Male 33.4
Sample B Male 44.1
Sample C Female 47.2
Sample D Female 33.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.4
75651167 Antisense, RP_060518_01_C02, Mouse strain C57BL/6J (56 days, male) 8.4
638731 Antisense, RP_040831_02_E10, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.