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SLC35F4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.9 nTPM
HPA:0.9 nTPM
GTEx:2.5 nTPM
FANTOM5:4.8 Scaled Tags Per Million
Pig:2.7 nTPM
Mouse:12.8 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA043853
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.7
2290 Female, age 72, unknown 1.2
1857 Female, age 85, left hemisphere 1.0
1854 Male, age 80, left hemisphere 0.9
1781 Male, age 74, unknown 0.7
2289 Male, age 61, right hemisphere 0.7
2288 Male, age 75, left hemisphere 0.3
2846 Female, age 79, unknown 0.3
2481 Female, age 94, left hemisphere 0.2
Claustrum
nTPM: 0.1
2568 Male, age 61, both hemispheres 0.3
2196 Female, age 79, unknown 0.2
2284 Female, age 91, both hemispheres 0.2
2392 Female, age 94, both hemispheres 0.2
2491 Male, age 75, both hemispheres 0.2
2198 Male, age 80, both hemispheres 0.1
2292 Female, age 85, both hemispheres 0.1
1956 Male, age 74, unknown 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.1
1996 Male, age 80, right hemisphere 0.2
2395 Male, age 75, both hemispheres 0.2
2567 Female, age 72, unknown 0.2
2646 Male, age 61, right hemisphere 0.1
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.2
2287 Male, age 75, right hemisphere 0.3
2483 Female, age 94, right hemisphere 0.3
2566 Female, age 72, unknown 0.3
2778 Female, age 91, both hemispheres 0.2
2037 Male, age 80, right hemisphere 0.1
2111 Female, age 85, right hemisphere 0.1
1818 Male, age 74, unknown 0.0
Nucleus accumbens
nTPM: 0.9
1856 Female, age 91, right hemisphere 1.5
1783 Male, age 74, unknown 1.2
1806 Female, age 85, left hemisphere 1.2
2824 Male, age 61, right hemisphere 1.2
2698 Female, age 72, unknown 0.7
2732 Male, age 80, right hemisphere 0.7
2286 Male, age 75, left hemisphere 0.4
2391 Female, age 94, left hemisphere 0.2
Nucleus basalis of Meynert
nTPM: 0.3
2393 Male, age 80, right hemisphere 0.5
2484 Female, age 94, left hemisphere 0.3
2569 Male, age 61, both hemispheres 0.2
2821 Male, age 75, both hemispheres 0.2
Nucleus of the diagonal band
nTPM: 0.6
1979 Male, age 74, unknown 2.3
1812 Female, age 91, both hemispheres 0.2
2775 Male, age 80, right hemisphere 0.2
2029 Male, age 61, right hemisphere 0.1
2195 Female, age 85, both hemispheres 0.1
Olfactory tubercle
nTPM: 0.2
1846 Male, age 80, right hemisphere 0.2
1998 Female, age 91, both hemispheres 0.2
2487 Female, age 94, left hemisphere 0.2
2856 Male, age 75, right hemisphere 0.2
Putamen
nTPM: 0.6
1838 Male, age 80, right hemisphere 0.9
1937 Female, age 91, right hemisphere 0.9
2466 Female, age 79, unknown 0.6
1829 Male, age 74, unknown 0.5
2489 Female, age 72, unknown 0.5
2647 Male, age 75, left hemisphere 0.5
2482 Female, age 94, left hemisphere 0.3
Septal nuclei
nTPM: 0.5
2199 Male, age 80, right hemisphere 1.7
2394 Male, age 61, left hemisphere 0.7
2059 Female, age 85, both hemispheres 0.4
2009 Female, age 91, both hemispheres 0.3
2629 Female, age 94, right hemisphere 0.2
2031 Female, age 72, unknown 0.1
1960 Male, age 74, unknown 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.7
Samples: 246

Max nTPM: 5.2
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 1.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 5.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 4.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 4.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 4.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 4.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 4.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 4.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 4.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 4.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 3.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 3.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.5
Samples: 246

Max nTPM: 7.6
Min nTPM: 0.0
Std nTPM: 1.4
Median nTPM: 2.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 7.6
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 6.4
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 5.9
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 5.4
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 5.4
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 5.2
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 5.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 5.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 4.9
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 4.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 4.8
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Brain - Putamen (basal ganglia)
Average nTPM: 1.3
Samples: 205

Max nTPM: 4.3
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 1.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 4.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 3.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 3.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 3.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 3.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 3.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 3.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 3.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 2.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 2.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 2.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.2
FF:10164-103B2 76 years, female 4.2
Globus pallidus
Scaled Tags Per Million: 0.8
FF:10175-103C4 60 years, female 1.5
FF:10161-103A8 76 years, female 0.1
Nucleus accumbens
Scaled Tags Per Million: 1.9
FF:10037-101F1 23-56 years, mixed 1.9
Putamen
Scaled Tags Per Million: 4.8
FF:10176-103C5 60 years, female 4.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.7
Pig sample Sample description nTPM
Caudate
nTPM: 0.7
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.5
Sample A Female 1.1
Sample B Female 0.6
Sample C Male 0.6
Sample D Male 0.5
Putamen
nTPM: 0.9
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.4
Sample A Female 1.0
Sample B Female 0.4
Sample C Male 1.6
Sample D Male 0.6
Septum
nTPM: 2.7
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.1
Sample A Female 3.6
Sample B Female 2.5
Sample C Male 2.1
Sample D Male 2.7
Ventral pallidum
nTPM: 2.5
Samples: 4

Max nTPM: 4.2
Min nTPM: 0.7
Sample A Female 1.1
Sample B Female 4.2
Sample C Male 3.9
Sample D Male 0.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.2
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.2
Sample A Male 5.2
Sample B Male 6.1
Sample C Female 6.7
Sample D Female 6.8
Septum
nTPM: 11.1
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.0
Sample A Male 12.0
Sample B Male 11.7
Sample C Female 10.6
Sample D Female 10.0
Ventral forebrain
nTPM: 12.8
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.1
Sample A Male 14.6
Sample B Male 12.7
Sample C Female 11.1
Sample D Female 12.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
78534530 Antisense, RP_070620_01_C01, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.2
78534530 Antisense, RP_070620_01_C01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.