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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:250.4 nTPM
HPA:250.4 nTPM
GTEx:248.7 nTPM
FANTOM5:408.6 Scaled Tags Per Million
Pig:80.8 nTPM
Mouse:50.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 250.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 228.4
1830 Male, age 51, unknown 238.4
1833 Male, age 53, unknown 238.1
2411 Female, age 72, unknown 234.1
2586 Male, age 75, left hemisphere 230.8
1870 Female, age 42, unknown 229.4
2666 Male, age 74, left hemisphere 228.4
2019 Male, age 18, unknown 225.2
2828 Female, age 72, unknown 223.1
2219 Male, age 76, both hemispheres 221.7
1827 Male, age 72, unknown 214.6
Dorsal raphe nucleus
nTPM: 219.5
2750 Male, age 76, both hemispheres 247.5
2047 Male, age 72, unknown 226.6
1828 Male, age 53, unknown 223.1
2016 Female, age 72, unknown 217.8
2298 Female, age 72, unknown 182.5
Inferior colliculus
nTPM: 205.5
1848 Female, age 42, unknown 216.5
1890 Male, age 53, unknown 212.2
2849 Male, age 72, unknown 204.7
2097 Female, age 72, unknown 188.5
Median raphe nucleus
nTPM: 231.1
2220 Male, age 76, midline 231.1
Pedunculopontine tegmental nucleus
nTPM: 230.0
2338 Male, age 61, both hemispheres 256.1
2334 Male, age 80, both hemispheres 227.0
1921 Female, age 85, both hemispheres 206.8
Periaquaductal grey, anterior
nTPM: 197.3
1947 Male, age 18, unknown 220.0
1795 Male, age 51, unknown 189.7
2502 Female, age 75, unknown 182.3
Periaquaductal grey, dorsal
nTPM: 204.1
2850 Male, age 76, both hemispheres 214.4
2464 Female, age 72, unknown 214.2
1831 Male, age 72, unknown 196.4
1840 Male, age 53, unknown 191.4
Periaquaductal grey, lateral
nTPM: 192.7
2140 Male, age 76, both hemispheres 202.6
2053 Male, age 18, unknown 190.5
2272 Male, age 74, both hemispheres 185.1
Pretectal area
nTPM: 203.6
1815 Male, age 53, unknown 223.3
2007 Male, age 72, unknown 211.0
1817 Female, age 42, unknown 207.3
2667 Female, age 75, unknown 206.1
1944 Female, age 72, unknown 205.0
2407 Male, age 75, both hemispheres 201.7
2825 Male, age 18, unknown 200.3
2316 Male, age 76, right hemisphere 199.4
1816 Male, age 51, unknown 197.6
2224 Female, age 72, unknown 195.0
2273 Male, age 74, both hemispheres 192.5
Red nucleus
nTPM: 244.2
2503 Female, age 72, unknown 271.1
2588 Male, age 74, left hemisphere 268.7
1821 Female, age 72, unknown 260.0
1865 Male, age 51, unknown 257.8
2823 Male, age 76, right hemisphere 248.4
1904 Male, age 53, unknown 245.3
1954 Female, age 42, unknown 243.4
2725 Female, age 75, unknown 241.2
2227 Male, age 72, unknown 236.2
2769 Male, age 72, unknown 232.2
2785 Male, age 18, unknown 223.6
2584 Male, age 75, left hemisphere 202.8
Substantia nigra
nTPM: 250.4
1916 Female, age 42, unknown 285.9
2699 Male, age 18, unknown 274.0
2409 Female, age 72, unknown 265.4
2241 Male, age 72, unknown 261.8
1851 Male, age 51, unknown 260.7
1941 Male, age 53, unknown 254.7
2583 Male, age 75, right hemisphere 241.8
2590 Female, age 75, unknown 233.6
1889 Female, age 72, unknown 227.7
2665 Male, age 74, both hemispheres 198.1
Superior colliculus
nTPM: 212.3
2668 Female, age 75, unknown 241.6
1913 Female, age 42, unknown 239.4
1995 Male, age 72, unknown 221.4
1895 Male, age 76, right hemisphere 219.2
2587 Male, age 74, left hemisphere 218.7
1839 Male, age 51, unknown 209.0
2087 Female, age 72, unknown 204.7
1796 Male, age 53, unknown 200.0
2261 Male, age 18, unknown 194.2
2664 Male, age 75, both hemispheres 175.1
Ventral tegmental area
nTPM: 236.2
2218 Male, age 76, both hemispheres 261.9
1915 Female, age 42, unknown 250.3
2410 Female, age 72, unknown 242.9
2223 Female, age 72, unknown 230.6
1942 Male, age 51, unknown 220.0
2021 Male, age 53, unknown 211.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 248.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 248.7
Samples: 139

Max nTPM: 573.2
Min nTPM: 119.4
Std nTPM: 56.6
Median nTPM: 241.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 573.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 430.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 400.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 396.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 395.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 375.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 362.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 339.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 328.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 316.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 315.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 408.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 408.6
FF:10158-103A5 76 years, female 408.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.8
Pig sample Sample description nTPM
Midbrain
nTPM: 72.8
Samples: 4

Max nTPM: 82.5
Min nTPM: 64.0
Sample A Female 80.7
Sample B Female 64.0
Sample C Male 82.5
Sample D Male 64.1
Periaqueductal gray
nTPM: 59.6
Samples: 3

Max nTPM: 63.1
Min nTPM: 56.2
Sample B Female 59.4
Sample C Male 63.1
Sample D Male 56.2
Substantia nigra
nTPM: 80.8
Samples: 4

Max nTPM: 92.7
Min nTPM: 67.3
Sample A Female 76.2
Sample B Female 67.3
Sample C Male 87.1
Sample D Male 92.7
Superior colliculi
nTPM: 66.5
Samples: 4

Max nTPM: 86.4
Min nTPM: 44.9
Sample A Female 59.0
Sample B Female 44.9
Sample C Male 86.4
Sample D Male 75.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.4
Samples: 4

Max nTPM: 57.0
Min nTPM: 35.0
Sample A Male 35.0
Sample B Male 55.2
Sample C Female 54.5
Sample D Female 57.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70238943 Antisense, RP_050526_04_E02, Mouse strain C57BL/6J (56 days, male) 0.2
73834445 Antisense, RP_051212_03_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.