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BEND6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:12.6 nTPM
HPA:12.6 nTPM
GTEx:20.2 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:54.6 nTPM
Mouse:117.9 nTPM
Allen mouse:3.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031605
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.6
Sample id Sample description nTPM
Hippocampus
nTPM: 12.4
1898 Male, age 80, left hemisphere 16.1
2148 Female, age 91, left hemisphere 13.9
2621 Female, age 67, right hemisphere 13.5
2529 Female, age 94, left hemisphere 12.6
1855 Male, age 76, left hemisphere 9.8
1911 Female, age 85, right hemisphere 8.7
Dentate gyrus
nTPM: 12.6
1927 Female, age 91, both hemispheres 16.9
2530 Female, age 94, left hemisphere 15.2
2531 Female, age 67, both hemispheres 12.2
2528 Male, age 74, both hemispheres 10.9
2246 Female, age 85, both hemispheres 10.4
2010 Male, age 76, both hemispheres 9.7
Entorhinal gyrus
nTPM: 10.8
2686 Male, age 75, right hemisphere 12.9
2613 Female, age 94, left hemisphere 12.1
1938 Female, age 85, left hemisphere 11.7
1787 Male, age 76, left hemisphere 10.0
2764 Male, age 80, right hemisphere 9.7
2117 Female, age 91, right hemisphere 8.4
Hippocampus, CA1
nTPM: 12.3
2749 Male, age 80, left hemisphere 18.3
2527 Male, age 74, both hemispheres 13.5
1873 Female, age 85, both hemispheres 12.9
2045 Male, age 76, both hemispheres 9.7
2082 Female, age 91, right hemisphere 7.3
Hippocampus, CA2
nTPM: 11.8
1892 Male, age 76, both hemispheres 16.2
1963 Male, age 80, left hemisphere 15.5
2437 Female, age 94, left hemisphere 13.0
2249 Male, age 74, both hemispheres 10.0
2113 Female, age 91, right hemisphere 8.8
1940 Female, age 85, left hemisphere 7.1
Hippocampus, CA3
nTPM: 12.6
2620 Female, age 94, left hemisphere 16.2
2137 Male, age 80, left hemisphere 14.7
2861 Female, age 67, both hemispheres 12.3
1867 Male, age 76, both hemispheres 12.1
1891 Female, age 85, both hemispheres 11.0
2436 Male, age 74, both hemispheres 9.0
Parahippocampal cortex
nTPM: 11.7
2692 Male, age 74, both hemispheres 13.9
2245 Female, age 91, both hemispheres 13.8
1850 Male, age 80, both hemispheres 13.3
1990 Female, age 91, right hemisphere 12.6
2532 Female, age 72, left hemisphere 12.1
2250 Female, age 67, right hemisphere 11.7
2693 Female, age 94, both hemispheres 11.5
2622 Female, age 67, right hemisphere 10.4
1933 Female, age 85, both hemispheres 9.3
2018 Male, age 76, both hemispheres 8.2
Perirhinal gyrus
nTPM: 12.0
2521 Female, age 94, right hemisphere 12.7
1794 Male, age 80, right hemisphere 12.6
1847 Female, age 91, left hemisphere 12.6
1841 Female, age 85, right hemisphere 11.6
2848 Male, age 76, right hemisphere 10.5
Subiculum
nTPM: 10.7
2438 Female, age 94, left hemisphere 15.1
1977 Female, age 85, both hemispheres 10.9
1901 Male, age 80, both hemispheres 10.8
2729 Female, age 91, right hemisphere 10.8
2619 Male, age 74, both hemispheres 10.5
2042 Male, age 76, both hemispheres 6.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.2
Samples: 197

Max nTPM: 51.9
Min nTPM: 2.7
Std nTPM: 8.7
Median nTPM: 19.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 51.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 50.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 50.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 48.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 44.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 44.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 41.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 38.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 38.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 36.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 35.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.5
FF:10169-103B7 60 years, female 32.4
FF:10153-102I9 76 years, female 16.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.3
Samples: 4

Max nTPM: 38.7
Min nTPM: 25.2
Sample A Female 38.7
Sample B Female 29.7
Sample C Male 31.4
Sample D Male 25.2
Entorhinal cortex
nTPM: 54.6
Samples: 4

Max nTPM: 66.7
Min nTPM: 47.1
Sample A Female 55.4
Sample B Female 66.7
Sample C Male 49.1
Sample D Male 47.1
Subiculum
nTPM: 30.9
Samples: 4

Max nTPM: 46.8
Min nTPM: 25.3
Sample A Female 46.8
Sample B Female 25.6
Sample C Male 25.3
Sample D Male 25.8
Ventral hippocampus
nTPM: 30.4
Samples: 4

Max nTPM: 37.2
Min nTPM: 25.6
Sample A Female 37.2
Sample B Female 25.6
Sample C Male 31.3
Sample D Male 27.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 117.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 117.9
Samples: 4

Max nTPM: 134.9
Min nTPM: 106.8
Sample A Male 123.0
Sample B Male 134.9
Sample C Female 106.8
Sample D Female 106.8
Hippocampal formation
nTPM: 78.2
Samples: 4

Max nTPM: 97.1
Min nTPM: 64.8
Sample A Male 97.1
Sample B Male 75.0
Sample C Female 64.8
Sample D Female 75.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.7
68844391 Antisense, RP_050222_01_E07, Mouse strain C57BL/6J (56 days, male) 3.9
77280313 Antisense, RP_070116_01_B03, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.