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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:39.6 nTPM
HPA:39.6 nTPM
GTEx:37.8 nTPM
FANTOM5:202.2 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:77.6 nTPM
Allen mouse:5.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA012609Antibody HPA012723Antibody CAB011489
Glial cells MediumHighMedium
Neuronal cells HighHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Hippocampus
nTPM: 36.7
2621 Female, age 67, right hemisphere 38.8
2529 Female, age 94, left hemisphere 38.4
2148 Female, age 91, left hemisphere 38.1
1855 Male, age 76, left hemisphere 37.7
1898 Male, age 80, left hemisphere 37.0
1911 Female, age 85, right hemisphere 30.4
Dentate gyrus
nTPM: 37.8
2530 Female, age 94, left hemisphere 42.2
2531 Female, age 67, both hemispheres 40.0
2246 Female, age 85, both hemispheres 39.2
2010 Male, age 76, both hemispheres 39.0
1927 Female, age 91, both hemispheres 34.1
2528 Male, age 74, both hemispheres 32.3
Entorhinal gyrus
nTPM: 37.4
2764 Male, age 80, right hemisphere 41.0
2613 Female, age 94, left hemisphere 39.6
2117 Female, age 91, right hemisphere 37.8
1787 Male, age 76, left hemisphere 37.3
1938 Female, age 85, left hemisphere 36.5
2686 Male, age 75, right hemisphere 32.4
Hippocampus, CA1
nTPM: 39.1
2749 Male, age 80, left hemisphere 45.4
2045 Male, age 76, both hemispheres 41.9
1873 Female, age 85, both hemispheres 38.6
2082 Female, age 91, right hemisphere 34.9
2527 Male, age 74, both hemispheres 34.5
Hippocampus, CA2
nTPM: 36.2
1892 Male, age 76, both hemispheres 38.7
1963 Male, age 80, left hemisphere 38.6
2113 Female, age 91, right hemisphere 36.0
2437 Female, age 94, left hemisphere 35.4
1940 Female, age 85, left hemisphere 34.8
2249 Male, age 74, both hemispheres 33.6
Hippocampus, CA3
nTPM: 36.8
2620 Female, age 94, left hemisphere 49.3
2137 Male, age 80, left hemisphere 41.4
1867 Male, age 76, both hemispheres 35.7
1891 Female, age 85, both hemispheres 34.0
2861 Female, age 67, both hemispheres 31.9
2436 Male, age 74, both hemispheres 28.2
Parahippocampal cortex
nTPM: 34.8
2245 Female, age 91, both hemispheres 41.1
1850 Male, age 80, both hemispheres 39.9
2532 Female, age 72, left hemisphere 39.4
1990 Female, age 91, right hemisphere 35.9
2250 Female, age 67, right hemisphere 34.0
2693 Female, age 94, both hemispheres 33.5
1933 Female, age 85, both hemispheres 33.3
2018 Male, age 76, both hemispheres 33.1
2692 Male, age 74, both hemispheres 30.8
2622 Female, age 67, right hemisphere 26.8
Perirhinal gyrus
nTPM: 39.6
2848 Male, age 76, right hemisphere 43.3
1794 Male, age 80, right hemisphere 40.9
2521 Female, age 94, right hemisphere 38.5
1841 Female, age 85, right hemisphere 37.8
1847 Female, age 91, left hemisphere 37.5
Subiculum
nTPM: 35.3
1977 Female, age 85, both hemispheres 39.4
2438 Female, age 94, left hemisphere 36.7
1901 Male, age 80, both hemispheres 35.8
2042 Male, age 76, both hemispheres 35.3
2619 Male, age 74, both hemispheres 32.4
2729 Female, age 91, right hemisphere 32.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.8
Samples: 197

Max nTPM: 66.0
Min nTPM: 21.8
Std nTPM: 7.6
Median nTPM: 37.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 66.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 60.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 59.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 55.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 54.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 54.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 54.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 52.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 51.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 51.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 51.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 202.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 202.2
FF:10169-103B7 60 years, female 235.4
FF:10153-102I9 76 years, female 169.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 40.6
Samples: 4

Max nTPM: 50.4
Min nTPM: 29.5
Sample A Female 50.4
Sample B Female 42.0
Sample C Male 40.4
Sample D Male 29.5
Entorhinal cortex
nTPM: 37.4
Samples: 4

Max nTPM: 44.1
Min nTPM: 33.3
Sample A Female 44.1
Sample B Female 35.2
Sample C Male 37.1
Sample D Male 33.3
Subiculum
nTPM: 38.0
Samples: 4

Max nTPM: 48.0
Min nTPM: 33.1
Sample A Female 48.0
Sample B Female 33.1
Sample C Male 37.4
Sample D Male 33.5
Ventral hippocampus
nTPM: 40.9
Samples: 4

Max nTPM: 50.7
Min nTPM: 27.6
Sample A Female 43.9
Sample B Female 27.6
Sample C Male 50.7
Sample D Male 41.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 77.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 75.7
Samples: 4

Max nTPM: 83.7
Min nTPM: 71.0
Sample A Male 72.2
Sample B Male 71.0
Sample C Female 75.7
Sample D Female 83.7
Hippocampal formation
nTPM: 77.6
Samples: 4

Max nTPM: 88.6
Min nTPM: 69.8
Sample A Male 69.8
Sample B Male 76.4
Sample C Female 88.6
Sample D Female 75.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.4
69980340 Antisense, RP_050512_04_D02, Mouse strain C57BL/6J (56 days, male) 10.2
69549673 Antisense, RP_050317_04_E09, Mouse strain C57BL/6J (56 days, male) 5.5
71211332 Antisense, RP_050816_01_C04, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.