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TGOLN2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.4 nTPM
HPA:43.4 nTPM
GTEx:42.9 nTPM
FANTOM5:185.1 Scaled Tags Per Million
Pig:54.6 nTPM
Mouse:118.6 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.6
2666 Male, age 74, left hemisphere 46.5
2019 Male, age 18, unknown 43.6
1827 Male, age 72, unknown 41.1
1870 Female, age 42, unknown 38.1
2828 Female, age 72, unknown 37.5
2411 Female, age 72, unknown 37.1
1830 Male, age 51, unknown 36.9
1833 Male, age 53, unknown 36.7
2219 Male, age 76, both hemispheres 35.0
2586 Male, age 75, left hemisphere 33.5
Dorsal raphe nucleus
nTPM: 32.2
2750 Male, age 76, both hemispheres 39.4
1828 Male, age 53, unknown 33.5
2298 Female, age 72, unknown 33.4
2016 Female, age 72, unknown 28.1
2047 Male, age 72, unknown 26.5
Inferior colliculus
nTPM: 33.5
2097 Female, age 72, unknown 37.6
2849 Male, age 72, unknown 33.5
1890 Male, age 53, unknown 32.6
1848 Female, age 42, unknown 30.2
Median raphe nucleus
nTPM: 40.5
2220 Male, age 76, midline 40.5
Pedunculopontine tegmental nucleus
nTPM: 39.7
2338 Male, age 61, both hemispheres 45.5
2334 Male, age 80, both hemispheres 39.9
1921 Female, age 85, both hemispheres 33.7
Periaquaductal grey, anterior
nTPM: 39.0
1947 Male, age 18, unknown 41.0
1795 Male, age 51, unknown 38.5
2502 Female, age 75, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 33.6
1831 Male, age 72, unknown 36.5
2850 Male, age 76, both hemispheres 35.8
1840 Male, age 53, unknown 31.4
2464 Female, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 37.3
2272 Male, age 74, both hemispheres 41.1
2140 Male, age 76, both hemispheres 36.5
2053 Male, age 18, unknown 34.3
Pretectal area
nTPM: 43.4
1817 Female, age 42, unknown 54.6
1816 Male, age 51, unknown 53.9
1815 Male, age 53, unknown 50.5
2007 Male, age 72, unknown 49.5
1944 Female, age 72, unknown 46.9
2407 Male, age 75, both hemispheres 41.3
2273 Male, age 74, both hemispheres 38.4
2825 Male, age 18, unknown 36.3
2224 Female, age 72, unknown 35.7
2667 Female, age 75, unknown 35.4
2316 Male, age 76, right hemisphere 35.3
Red nucleus
nTPM: 40.8
2785 Male, age 18, unknown 48.2
2725 Female, age 75, unknown 48.1
2584 Male, age 75, left hemisphere 42.6
2503 Female, age 72, unknown 41.2
2588 Male, age 74, left hemisphere 41.2
1904 Male, age 53, unknown 40.4
1865 Male, age 51, unknown 40.0
1821 Female, age 72, unknown 39.6
2227 Male, age 72, unknown 38.1
2823 Male, age 76, right hemisphere 37.6
1954 Female, age 42, unknown 37.1
2769 Male, age 72, unknown 35.8
Substantia nigra
nTPM: 36.9
2590 Female, age 75, unknown 42.9
1889 Female, age 72, unknown 41.4
2583 Male, age 75, right hemisphere 40.4
2665 Male, age 74, both hemispheres 40.3
2241 Male, age 72, unknown 39.2
2409 Female, age 72, unknown 36.5
1851 Male, age 51, unknown 36.2
1941 Male, age 53, unknown 33.8
1916 Female, age 42, unknown 30.9
2699 Male, age 18, unknown 27.5
Superior colliculus
nTPM: 39.2
2261 Male, age 18, unknown 46.2
2087 Female, age 72, unknown 43.7
1913 Female, age 42, unknown 41.9
2587 Male, age 74, left hemisphere 40.5
1796 Male, age 53, unknown 40.1
1995 Male, age 72, unknown 39.1
1839 Male, age 51, unknown 36.2
2668 Female, age 75, unknown 35.4
2664 Male, age 75, both hemispheres 34.9
1895 Male, age 76, right hemisphere 34.2
Ventral tegmental area
nTPM: 36.5
2223 Female, age 72, unknown 40.7
2218 Male, age 76, both hemispheres 38.8
2410 Female, age 72, unknown 36.9
2021 Male, age 53, unknown 35.7
1942 Male, age 51, unknown 33.7
1915 Female, age 42, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.9
Samples: 139

Max nTPM: 76.9
Min nTPM: 26.9
Std nTPM: 8.4
Median nTPM: 41.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 64.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 64.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 63.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 63.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 60.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 58.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 58.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 58.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 56.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 185.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 185.1
FF:10158-103A5 76 years, female 185.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.6
Pig sample Sample description nTPM
Midbrain
nTPM: 52.5
Samples: 4

Max nTPM: 57.9
Min nTPM: 43.0
Sample A Female 57.9
Sample B Female 43.0
Sample C Male 55.2
Sample D Male 54.0
Periaqueductal gray
nTPM: 46.2
Samples: 3

Max nTPM: 52.7
Min nTPM: 43.0
Sample B Female 43.0
Sample C Male 52.7
Sample D Male 43.0
Substantia nigra
nTPM: 52.0
Samples: 4

Max nTPM: 64.3
Min nTPM: 39.1
Sample A Female 64.3
Sample B Female 44.0
Sample C Male 60.7
Sample D Male 39.1
Superior colliculi
nTPM: 54.5
Samples: 4

Max nTPM: 60.9
Min nTPM: 49.8
Sample A Female 60.9
Sample B Female 55.2
Sample C Male 49.8
Sample D Male 52.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 118.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.6
Samples: 4

Max nTPM: 127.7
Min nTPM: 104.8
Sample A Male 104.8
Sample B Male 120.9
Sample C Female 127.7
Sample D Female 121.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
69980340 Antisense, RP_050512_04_D02, Mouse strain C57BL/6J (56 days, male) 11.7
69549673 Antisense, RP_050317_04_E09, Mouse strain C57BL/6J (56 days, male) 7.3
71211332 Antisense, RP_050816_01_C04, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.