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ZSCAN1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:2.7 nTPM
HPA:2.7 nTPM
GTEx:6.6 nTPM
FANTOM5:20.2 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA007938
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.1
2289 Male, age 61, right hemisphere 4.1
1854 Male, age 80, left hemisphere 2.6
2290 Female, age 72, unknown 2.5
2288 Male, age 75, left hemisphere 2.1
1781 Male, age 74, unknown 1.5
2846 Female, age 79, unknown 1.4
2481 Female, age 94, left hemisphere 1.3
1857 Female, age 85, left hemisphere 1.1
Claustrum
nTPM: 2.4
2645 Female, age 72, unknown 4.6
2491 Male, age 75, both hemispheres 3.0
2568 Male, age 61, both hemispheres 3.0
2196 Female, age 79, unknown 2.7
2284 Female, age 91, both hemispheres 2.5
2198 Male, age 80, both hemispheres 2.1
1956 Male, age 74, unknown 1.6
2392 Female, age 94, both hemispheres 1.2
2292 Female, age 85, both hemispheres 1.0
Globus pallidus, externus
nTPM: 1.8
2646 Male, age 61, right hemisphere 3.7
2567 Female, age 72, unknown 3.2
2772 Female, age 79, unknown 1.0
1996 Male, age 80, right hemisphere 0.6
2395 Male, age 75, both hemispheres 0.4
Globus pallidus, internus
nTPM: 1.5
2566 Female, age 72, unknown 3.0
1818 Male, age 74, unknown 2.4
2111 Female, age 85, right hemisphere 1.8
2037 Male, age 80, right hemisphere 1.4
2287 Male, age 75, right hemisphere 0.8
2778 Female, age 91, both hemispheres 0.5
2483 Female, age 94, right hemisphere 0.3
Nucleus accumbens
nTPM: 2.6
2732 Male, age 80, right hemisphere 4.3
2824 Male, age 61, right hemisphere 4.0
1783 Male, age 74, unknown 2.7
1806 Female, age 85, left hemisphere 2.6
1856 Female, age 91, right hemisphere 2.6
2286 Male, age 75, left hemisphere 2.1
2698 Female, age 72, unknown 1.8
2391 Female, age 94, left hemisphere 0.4
Nucleus basalis of Meynert
nTPM: 2.7
2569 Male, age 61, both hemispheres 4.5
2484 Female, age 94, left hemisphere 2.8
2393 Male, age 80, right hemisphere 2.2
2821 Male, age 75, both hemispheres 1.1
Nucleus of the diagonal band
nTPM: 2.7
1979 Male, age 74, unknown 5.4
2775 Male, age 80, right hemisphere 3.2
2195 Female, age 85, both hemispheres 2.5
1812 Female, age 91, both hemispheres 1.3
2029 Male, age 61, right hemisphere 1.2
Olfactory tubercle
nTPM: 2.3
2487 Female, age 94, left hemisphere 2.9
1998 Female, age 91, both hemispheres 2.6
2856 Male, age 75, right hemisphere 2.3
1846 Male, age 80, right hemisphere 1.5
Putamen
nTPM: 2.5
2647 Male, age 75, left hemisphere 3.5
1838 Male, age 80, right hemisphere 3.4
2489 Female, age 72, unknown 3.1
2466 Female, age 79, unknown 2.0
1829 Male, age 74, unknown 1.9
1937 Female, age 91, right hemisphere 1.8
2482 Female, age 94, left hemisphere 1.6
Septal nuclei
nTPM: 2.5
2199 Male, age 80, right hemisphere 4.1
2059 Female, age 85, both hemispheres 3.9
1960 Male, age 74, unknown 3.0
2009 Female, age 91, both hemispheres 2.1
2394 Male, age 61, left hemisphere 2.1
2031 Female, age 72, unknown 1.3
2629 Female, age 94, right hemisphere 1.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.9
Samples: 246

Max nTPM: 17.3
Min nTPM: 0.3
Std nTPM: 2.5
Median nTPM: 5.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 17.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 16.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 14.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 14.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 13.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 12.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 12.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 11.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 10.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 10.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 10.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 25.4
Min nTPM: 1.3
Std nTPM: 3.0
Median nTPM: 6.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 25.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 20.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 17.0
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 16.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 15.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 14.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 14.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 14.0
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 13.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 13.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 12.4
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Brain - Putamen (basal ganglia)
Average nTPM: 5.5
Samples: 205

Max nTPM: 17.4
Min nTPM: 0.5
Std nTPM: 2.0
Median nTPM: 5.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 17.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 12.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 11.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 10.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 10.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 9.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 9.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 9.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 8.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 8.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 8.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.3
FF:10164-103B2 76 years, female 13.3
Globus pallidus
Scaled Tags Per Million: 10.6
FF:10175-103C4 60 years, female 15.7
FF:10161-103A8 76 years, female 5.4
Nucleus accumbens
Scaled Tags Per Million: 19.3
FF:10037-101F1 23-56 years, mixed 19.3
Putamen
Scaled Tags Per Million: 20.2
FF:10176-103C5 60 years, female 20.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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