ABOUTMENU
HELP
NEWS
CCDC50
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:17.6 nTPM
HPA:17.6 nTPM
GTEx:11.5 nTPM
FANTOM5:41.9 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:17.3 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001336
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.6
Sample id Sample description nTPM
Hippocampus
nTPM: 17.6
2529 Female, age 94, left hemisphere 20.6
1855 Male, age 76, left hemisphere 17.8
2621 Female, age 67, right hemisphere 17.4
1898 Male, age 80, left hemisphere 17.0
1911 Female, age 85, right hemisphere 16.7
2148 Female, age 91, left hemisphere 16.3
Dentate gyrus
nTPM: 15.7
2530 Female, age 94, left hemisphere 19.0
2528 Male, age 74, both hemispheres 17.0
2010 Male, age 76, both hemispheres 16.5
2246 Female, age 85, both hemispheres 14.6
1927 Female, age 91, both hemispheres 13.8
2531 Female, age 67, both hemispheres 13.5
Entorhinal gyrus
nTPM: 16.0
2117 Female, age 91, right hemisphere 19.5
2686 Male, age 75, right hemisphere 17.6
1787 Male, age 76, left hemisphere 15.4
1938 Female, age 85, left hemisphere 15.1
2613 Female, age 94, left hemisphere 14.2
2764 Male, age 80, right hemisphere 13.9
Hippocampus, CA1
nTPM: 15.3
2527 Male, age 74, both hemispheres 18.1
1873 Female, age 85, both hemispheres 16.2
2045 Male, age 76, both hemispheres 15.2
2082 Female, age 91, right hemisphere 14.9
2749 Male, age 80, left hemisphere 12.3
Hippocampus, CA2
nTPM: 16.9
2437 Female, age 94, left hemisphere 18.9
2249 Male, age 74, both hemispheres 17.5
1963 Male, age 80, left hemisphere 17.4
2113 Female, age 91, right hemisphere 17.1
1940 Female, age 85, left hemisphere 16.1
1892 Male, age 76, both hemispheres 14.5
Hippocampus, CA3
nTPM: 14.9
1867 Male, age 76, both hemispheres 16.6
1891 Female, age 85, both hemispheres 16.2
2861 Female, age 67, both hemispheres 16.1
2436 Male, age 74, both hemispheres 16.0
2620 Female, age 94, left hemisphere 12.6
2137 Male, age 80, left hemisphere 11.9
Parahippocampal cortex
nTPM: 16.0
2018 Male, age 76, both hemispheres 18.2
2250 Female, age 67, right hemisphere 17.8
2692 Male, age 74, both hemispheres 17.7
2622 Female, age 67, right hemisphere 16.0
2693 Female, age 94, both hemispheres 15.8
2245 Female, age 91, both hemispheres 15.6
1933 Female, age 85, both hemispheres 14.8
2532 Female, age 72, left hemisphere 14.8
1850 Male, age 80, both hemispheres 14.7
1990 Female, age 91, right hemisphere 14.7
Perirhinal gyrus
nTPM: 14.3
1841 Female, age 85, right hemisphere 15.0
1847 Female, age 91, left hemisphere 14.8
2521 Female, age 94, right hemisphere 14.5
1794 Male, age 80, right hemisphere 14.3
2848 Male, age 76, right hemisphere 12.9
Subiculum
nTPM: 17.1
2042 Male, age 76, both hemispheres 18.4
2619 Male, age 74, both hemispheres 18.2
2729 Female, age 91, right hemisphere 17.8
2438 Female, age 94, left hemisphere 17.1
1901 Male, age 80, both hemispheres 15.4
1977 Female, age 85, both hemispheres 15.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.5
Samples: 197

Max nTPM: 36.3
Min nTPM: 5.5
Std nTPM: 3.6
Median nTPM: 10.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 36.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 21.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 20.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 20.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 20.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 20.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 18.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 18.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 17.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 17.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 17.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 41.9
FF:10153-102I9 76 years, female 46.1
FF:10169-103B7 60 years, female 37.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 26.1
Samples: 4

Max nTPM: 32.1
Min nTPM: 23.4
Sample A Female 25.2
Sample B Female 23.6
Sample C Male 32.1
Sample D Male 23.4
Entorhinal cortex
nTPM: 25.2
Samples: 4

Max nTPM: 26.5
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 25.8
Sample C Male 24.5
Sample D Male 26.5
Subiculum
nTPM: 27.8
Samples: 4

Max nTPM: 29.2
Min nTPM: 26.0
Sample A Female 28.1
Sample B Female 29.2
Sample C Male 26.0
Sample D Male 27.9
Ventral hippocampus
nTPM: 27.0
Samples: 4

Max nTPM: 28.9
Min nTPM: 25.6
Sample A Female 27.2
Sample B Female 26.3
Sample C Male 25.6
Sample D Male 28.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 16.5
Sample A Male 16.8
Sample B Male 17.6
Sample C Female 18.1
Sample D Female 16.5
Hippocampal formation
nTPM: 16.1
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.8
Sample A Male 18.1
Sample B Male 16.0
Sample C Female 15.3
Sample D Female 14.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
71832844 Antisense, RP_051005_03_G06, Mouse strain C57BL/6J (56 days, male) 3.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.