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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA:13.3 nTPM
GTEx:10.3 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:12.5 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.3
1857 Female, age 85, left hemisphere 16.0
2846 Female, age 79, unknown 15.4
2290 Female, age 72, unknown 14.5
1854 Male, age 80, left hemisphere 12.4
2289 Male, age 61, right hemisphere 11.0
2481 Female, age 94, left hemisphere 10.6
1781 Male, age 74, unknown 9.9
2288 Male, age 75, left hemisphere 8.6
Claustrum
nTPM: 9.4
2568 Male, age 61, both hemispheres 10.6
2292 Female, age 85, both hemispheres 10.5
2284 Female, age 91, both hemispheres 10.3
2645 Female, age 72, unknown 10.3
2196 Female, age 79, unknown 9.7
2198 Male, age 80, both hemispheres 9.7
2392 Female, age 94, both hemispheres 8.6
1956 Male, age 74, unknown 8.2
2491 Male, age 75, both hemispheres 6.7
Globus pallidus, externus
nTPM: 8.2
2395 Male, age 75, both hemispheres 8.7
1996 Male, age 80, right hemisphere 8.5
2567 Female, age 72, unknown 8.1
2646 Male, age 61, right hemisphere 8.0
2772 Female, age 79, unknown 7.5
Globus pallidus, internus
nTPM: 8.2
2483 Female, age 94, right hemisphere 10.5
2037 Male, age 80, right hemisphere 8.5
2287 Male, age 75, right hemisphere 8.1
2778 Female, age 91, both hemispheres 8.1
1818 Male, age 74, unknown 7.7
2566 Female, age 72, unknown 7.5
2111 Female, age 85, right hemisphere 7.3
Nucleus accumbens
nTPM: 9.6
1806 Female, age 85, left hemisphere 12.1
1856 Female, age 91, right hemisphere 12.0
1783 Male, age 74, unknown 9.9
2698 Female, age 72, unknown 9.9
2824 Male, age 61, right hemisphere 9.4
2391 Female, age 94, left hemisphere 8.4
2286 Male, age 75, left hemisphere 7.8
2732 Male, age 80, right hemisphere 6.9
Nucleus basalis of Meynert
nTPM: 11.2
2393 Male, age 80, right hemisphere 13.6
2484 Female, age 94, left hemisphere 11.7
2821 Male, age 75, both hemispheres 11.0
2569 Male, age 61, both hemispheres 8.7
Nucleus of the diagonal band
nTPM: 6.7
1979 Male, age 74, unknown 9.7
1812 Female, age 91, both hemispheres 6.4
2775 Male, age 80, right hemisphere 6.1
2029 Male, age 61, right hemisphere 6.0
2195 Female, age 85, both hemispheres 5.2
Olfactory tubercle
nTPM: 6.5
2856 Male, age 75, right hemisphere 7.2
1998 Female, age 91, both hemispheres 7.1
1846 Male, age 80, right hemisphere 6.1
2487 Female, age 94, left hemisphere 5.7
Putamen
nTPM: 13.3
2489 Female, age 72, unknown 16.9
2466 Female, age 79, unknown 16.2
1829 Male, age 74, unknown 14.8
1937 Female, age 91, right hemisphere 13.0
1838 Male, age 80, right hemisphere 12.5
2482 Female, age 94, left hemisphere 9.9
2647 Male, age 75, left hemisphere 9.9
Septal nuclei
nTPM: 7.3
2394 Male, age 61, left hemisphere 10.4
2199 Male, age 80, right hemisphere 10.2
2031 Female, age 72, unknown 7.1
2009 Female, age 91, both hemispheres 6.7
2059 Female, age 85, both hemispheres 6.4
2629 Female, age 94, right hemisphere 5.7
1960 Male, age 74, unknown 4.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.1
Samples: 246

Max nTPM: 18.9
Min nTPM: 4.1
Std nTPM: 2.1
Median nTPM: 9.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 18.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 17.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 16.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 16.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 15.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 15.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 15.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 14.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 14.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 14.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 14.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.1
Samples: 246

Max nTPM: 16.4
Min nTPM: 2.9
Std nTPM: 2.2
Median nTPM: 7.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 16.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 14.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 14.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 14.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 14.0
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 13.4
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 13.3
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 12.9
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 12.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 12.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 12.2
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Brain - Putamen (basal ganglia)
Average nTPM: 10.3
Samples: 205

Max nTPM: 18.5
Min nTPM: 5.2
Std nTPM: 2.4
Median nTPM: 10.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 18.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 18.1
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 16.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 16.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 15.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 15.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 15.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 15.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 14.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 14.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 14.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.9
FF:10164-103B2 76 years, female 32.9
Globus pallidus
Scaled Tags Per Million: 17.5
FF:10161-103A8 76 years, female 24.7
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 16.4
FF:10037-101F1 23-56 years, mixed 16.4
Putamen
Scaled Tags Per Million: 23.4
FF:10176-103C5 60 years, female 23.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Caudate
nTPM: 10.2
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.1
Sample A Female 9.1
Sample B Female 10.3
Sample C Male 11.2
Sample D Male 10.2
Putamen
nTPM: 15.8
Samples: 4

Max nTPM: 21.8
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 16.9
Sample C Male 21.8
Sample D Male 13.9
Septum
nTPM: 8.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 6.1
Sample A Female 9.0
Sample B Female 8.2
Sample C Male 10.4
Sample D Male 6.1
Ventral pallidum
nTPM: 9.5
Samples: 4

Max nTPM: 10.3
Min nTPM: 8.7
Sample A Female 10.3
Sample B Female 9.0
Sample C Male 9.9
Sample D Male 8.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.6
Samples: 4

Max nTPM: 15.0
Min nTPM: 11.0
Sample A Male 15.0
Sample B Male 12.8
Sample C Female 11.0
Sample D Female 11.4
Septum
nTPM: 6.4
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 5.8
Sample C Female 6.8
Sample D Female 7.7
Ventral forebrain
nTPM: 7.9
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.1
Sample A Male 8.1
Sample B Male 8.3
Sample C Female 7.1
Sample D Female 8.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
76135593 Antisense, RP_060601_01_A02, Mouse strain C57BL/6J (56 days, male) 0.6
74635602 Antisense, RP_060215_04_A11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.2
76135593 Antisense, RP_060601_01_A02, Mouse strain C57BL/6J (56 days, male) 0.3
74635602 Antisense, RP_060215_04_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.