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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.1 nTPM
HPA:33.1 nTPM
GTEx:42.9 nTPM
FANTOM5:124.6 Scaled Tags Per Million
Pig:51.0 nTPM
Mouse:137.4 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.4
2019 Male, age 18, unknown 35.8
1830 Male, age 51, unknown 27.3
1827 Male, age 72, unknown 26.8
1870 Female, age 42, unknown 25.9
1833 Male, age 53, unknown 25.3
2411 Female, age 72, unknown 25.3
2666 Male, age 74, left hemisphere 24.7
2828 Female, age 72, unknown 24.2
2219 Male, age 76, both hemispheres 23.1
2586 Male, age 75, left hemisphere 15.3
Dorsal raphe nucleus
nTPM: 21.1
2750 Male, age 76, both hemispheres 28.4
1828 Male, age 53, unknown 21.9
2016 Female, age 72, unknown 21.5
2047 Male, age 72, unknown 17.3
2298 Female, age 72, unknown 16.6
Inferior colliculus
nTPM: 26.4
1848 Female, age 42, unknown 26.7
2097 Female, age 72, unknown 26.4
1890 Male, age 53, unknown 26.3
2849 Male, age 72, unknown 26.1
Median raphe nucleus
nTPM: 23.3
2220 Male, age 76, midline 23.3
Pedunculopontine tegmental nucleus
nTPM: 33.1
2338 Male, age 61, both hemispheres 49.9
2334 Male, age 80, both hemispheres 27.6
1921 Female, age 85, both hemispheres 21.7
Periaquaductal grey, anterior
nTPM: 21.2
1947 Male, age 18, unknown 24.1
2502 Female, age 75, unknown 19.9
1795 Male, age 51, unknown 19.7
Periaquaductal grey, dorsal
nTPM: 20.7
2850 Male, age 76, both hemispheres 22.6
1831 Male, age 72, unknown 21.7
2464 Female, age 72, unknown 21.1
1840 Male, age 53, unknown 17.5
Periaquaductal grey, lateral
nTPM: 22.4
2272 Male, age 74, both hemispheres 28.3
2053 Male, age 18, unknown 20.4
2140 Male, age 76, both hemispheres 18.6
Pretectal area
nTPM: 27.9
2007 Male, age 72, unknown 36.0
1817 Female, age 42, unknown 35.6
1816 Male, age 51, unknown 32.2
1815 Male, age 53, unknown 31.9
2407 Male, age 75, both hemispheres 29.8
1944 Female, age 72, unknown 28.4
2316 Male, age 76, right hemisphere 27.5
2273 Male, age 74, both hemispheres 22.4
2667 Female, age 75, unknown 21.8
2224 Female, age 72, unknown 21.0
2825 Male, age 18, unknown 20.3
Red nucleus
nTPM: 27.9
2785 Male, age 18, unknown 32.7
1865 Male, age 51, unknown 30.9
2823 Male, age 76, right hemisphere 30.9
2503 Female, age 72, unknown 29.9
2725 Female, age 75, unknown 29.9
1904 Male, age 53, unknown 27.9
1954 Female, age 42, unknown 27.6
1821 Female, age 72, unknown 27.2
2769 Male, age 72, unknown 25.1
2588 Male, age 74, left hemisphere 25.0
2227 Male, age 72, unknown 23.7
2584 Male, age 75, left hemisphere 23.5
Substantia nigra
nTPM: 27.3
2583 Male, age 75, right hemisphere 33.8
2590 Female, age 75, unknown 33.7
2409 Female, age 72, unknown 32.5
1889 Female, age 72, unknown 30.2
1941 Male, age 53, unknown 29.5
2665 Male, age 74, both hemispheres 28.6
2241 Male, age 72, unknown 26.0
1851 Male, age 51, unknown 21.1
2699 Male, age 18, unknown 19.0
1916 Female, age 42, unknown 18.3
Superior colliculus
nTPM: 25.9
2587 Male, age 74, left hemisphere 28.6
1995 Male, age 72, unknown 27.9
2261 Male, age 18, unknown 27.1
2087 Female, age 72, unknown 27.0
1913 Female, age 42, unknown 26.9
1839 Male, age 51, unknown 26.0
1895 Male, age 76, right hemisphere 25.9
2668 Female, age 75, unknown 25.2
1796 Male, age 53, unknown 23.6
2664 Male, age 75, both hemispheres 21.2
Ventral tegmental area
nTPM: 23.8
2410 Female, age 72, unknown 27.3
2218 Male, age 76, both hemispheres 25.8
2223 Female, age 72, unknown 25.7
1942 Male, age 51, unknown 22.1
2021 Male, age 53, unknown 21.9
1915 Female, age 42, unknown 20.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.9
Samples: 139

Max nTPM: 74.4
Min nTPM: 13.6
Std nTPM: 12.7
Median nTPM: 42.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 74.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 73.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 72.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 71.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 70.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 68.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 64.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 64.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 64.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.6
FF:10158-103A5 76 years, female 124.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.0
Pig sample Sample description nTPM
Midbrain
nTPM: 51.0
Samples: 4

Max nTPM: 71.7
Min nTPM: 40.4
Sample A Female 71.7
Sample B Female 45.9
Sample C Male 45.9
Sample D Male 40.4
Periaqueductal gray
nTPM: 41.2
Samples: 3

Max nTPM: 45.6
Min nTPM: 37.3
Sample B Female 40.8
Sample C Male 45.6
Sample D Male 37.3
Substantia nigra
nTPM: 41.8
Samples: 4

Max nTPM: 51.6
Min nTPM: 36.3
Sample A Female 51.6
Sample B Female 38.3
Sample C Male 41.0
Sample D Male 36.3
Superior colliculi
nTPM: 40.0
Samples: 4

Max nTPM: 48.7
Min nTPM: 24.4
Sample A Female 48.7
Sample B Female 24.4
Sample C Male 47.9
Sample D Male 38.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.5
Samples: 4

Max nTPM: 142.1
Min nTPM: 130.2
Sample A Male 137.8
Sample B Male 139.7
Sample C Female 142.1
Sample D Female 130.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
564781 Antisense, RP_040826_01_F08, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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