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LGI4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.4 nTPM
HPA:68.4 nTPM
GTEx:52.4 nTPM
FANTOM5:88.1 Scaled Tags Per Million
Pig:46.6 nTPM
Mouse:16.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.7
2586 Male, age 75, left hemisphere 83.9
2828 Female, age 72, unknown 70.2
1870 Female, age 42, unknown 68.1
1833 Male, age 53, unknown 65.9
1827 Male, age 72, unknown 64.4
1830 Male, age 51, unknown 63.7
2019 Male, age 18, unknown 62.2
2666 Male, age 74, left hemisphere 61.6
2411 Female, age 72, unknown 60.8
2219 Male, age 76, both hemispheres 56.4
Dorsal raphe nucleus
nTPM: 61.9
1828 Male, age 53, unknown 66.5
2750 Male, age 76, both hemispheres 65.0
2016 Female, age 72, unknown 63.0
2298 Female, age 72, unknown 57.7
2047 Male, age 72, unknown 57.1
Inferior colliculus
nTPM: 60.7
2849 Male, age 72, unknown 62.2
1890 Male, age 53, unknown 61.3
1848 Female, age 42, unknown 60.6
2097 Female, age 72, unknown 58.7
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Pedunculopontine tegmental nucleus
nTPM: 61.0
2334 Male, age 80, both hemispheres 62.6
2338 Male, age 61, both hemispheres 60.6
1921 Female, age 85, both hemispheres 59.7
Periaquaductal grey, anterior
nTPM: 61.6
1795 Male, age 51, unknown 65.1
2502 Female, age 75, unknown 62.4
1947 Male, age 18, unknown 57.3
Periaquaductal grey, dorsal
nTPM: 65.1
2850 Male, age 76, both hemispheres 74.7
1831 Male, age 72, unknown 64.2
2464 Female, age 72, unknown 62.6
1840 Male, age 53, unknown 59.0
Periaquaductal grey, lateral
nTPM: 68.4
2140 Male, age 76, both hemispheres 80.0
2053 Male, age 18, unknown 66.2
2272 Male, age 74, both hemispheres 58.9
Pretectal area
nTPM: 64.7
2667 Female, age 75, unknown 69.8
1815 Male, age 53, unknown 68.8
1816 Male, age 51, unknown 66.6
2273 Male, age 74, both hemispheres 65.2
2825 Male, age 18, unknown 65.0
2316 Male, age 76, right hemisphere 64.8
1944 Female, age 72, unknown 64.6
2407 Male, age 75, both hemispheres 63.9
1817 Female, age 42, unknown 63.7
2007 Male, age 72, unknown 60.0
2224 Female, age 72, unknown 59.6
Red nucleus
nTPM: 68.2
2769 Male, age 72, unknown 73.7
2227 Male, age 72, unknown 72.8
1865 Male, age 51, unknown 71.5
1904 Male, age 53, unknown 70.7
2503 Female, age 72, unknown 69.0
2588 Male, age 74, left hemisphere 68.9
1954 Female, age 42, unknown 68.4
1821 Female, age 72, unknown 67.6
2823 Male, age 76, right hemisphere 65.9
2785 Male, age 18, unknown 65.0
2584 Male, age 75, left hemisphere 62.9
2725 Female, age 75, unknown 62.1
Substantia nigra
nTPM: 63.5
2699 Male, age 18, unknown 68.1
2583 Male, age 75, right hemisphere 66.4
1851 Male, age 51, unknown 66.3
1889 Female, age 72, unknown 66.1
2665 Male, age 74, both hemispheres 64.0
2409 Female, age 72, unknown 63.7
1916 Female, age 42, unknown 63.5
2590 Female, age 75, unknown 61.6
1941 Male, age 53, unknown 57.9
2241 Male, age 72, unknown 57.8
Superior colliculus
nTPM: 67.9
1995 Male, age 72, unknown 77.8
2261 Male, age 18, unknown 75.6
2664 Male, age 75, both hemispheres 71.1
1913 Female, age 42, unknown 70.2
2668 Female, age 75, unknown 69.1
2087 Female, age 72, unknown 66.9
1796 Male, age 53, unknown 66.3
2587 Male, age 74, left hemisphere 62.0
1839 Male, age 51, unknown 60.7
1895 Male, age 76, right hemisphere 59.5
Ventral tegmental area
nTPM: 63.8
2223 Female, age 72, unknown 69.0
2021 Male, age 53, unknown 64.1
2410 Female, age 72, unknown 64.0
2218 Male, age 76, both hemispheres 63.0
1915 Female, age 42, unknown 62.3
1942 Male, age 51, unknown 60.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.4
Samples: 139

Max nTPM: 159.7
Min nTPM: 5.7
Std nTPM: 21.8
Median nTPM: 50.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 159.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 137.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 123.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 107.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 106.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 90.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 90.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 86.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 85.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 80.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 80.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.1
FF:10158-103A5 76 years, female 88.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.6
Pig sample Sample description nTPM
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 75.3
Min nTPM: 27.3
Sample A Female 75.3
Sample B Female 32.1
Sample C Male 29.9
Sample D Male 27.3
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 33.3
Min nTPM: 28.7
Sample B Female 33.3
Sample C Male 32.2
Sample D Male 28.7
Substantia nigra
nTPM: 46.6
Samples: 4

Max nTPM: 56.0
Min nTPM: 36.5
Sample A Female 42.9
Sample B Female 50.9
Sample C Male 36.5
Sample D Male 56.0
Superior colliculi
nTPM: 30.8
Samples: 4

Max nTPM: 40.3
Min nTPM: 17.9
Sample A Female 40.3
Sample B Female 17.9
Sample C Male 31.5
Sample D Male 33.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 17.5
Min nTPM: 15.3
Sample A Male 17.5
Sample B Male 16.2
Sample C Female 15.3
Sample D Female 17.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69736112 Antisense, RP_050503_04_C01, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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