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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:90.3 nTPM
FANTOM5:22.5 Scaled Tags Per Million
Pig:518.2 nTPM
Mouse:453.0 nTPM
Allen mouse:21.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2219 Male, age 76, both hemispheres 43.4
2666 Male, age 74, left hemisphere 35.6
1870 Female, age 42, unknown 16.5
1827 Male, age 72, unknown 15.4
2828 Female, age 72, unknown 15.1
2019 Male, age 18, unknown 14.5
2586 Male, age 75, left hemisphere 10.5
1833 Male, age 53, unknown 7.5
2411 Female, age 72, unknown 6.3
1830 Male, age 51, unknown 3.3
Dorsal raphe nucleus
nTPM: 11.5
2047 Male, age 72, unknown 16.1
1828 Male, age 53, unknown 15.1
2750 Male, age 76, both hemispheres 14.0
2298 Female, age 72, unknown 12.3
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 18.5
1848 Female, age 42, unknown 24.3
2849 Male, age 72, unknown 20.9
1890 Male, age 53, unknown 14.8
2097 Female, age 72, unknown 14.0
Median raphe nucleus
nTPM: 37.0
2220 Male, age 76, midline 37.0
Pedunculopontine tegmental nucleus
nTPM: 28.3
2334 Male, age 80, both hemispheres 30.1
1921 Female, age 85, both hemispheres 29.2
2338 Male, age 61, both hemispheres 25.7
Periaquaductal grey, anterior
nTPM: 35.2
2502 Female, age 75, unknown 37.0
1947 Male, age 18, unknown 36.8
1795 Male, age 51, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 12.6
2850 Male, age 76, both hemispheres 19.3
1831 Male, age 72, unknown 17.9
1840 Male, age 53, unknown 12.6
2464 Female, age 72, unknown 0.8
Periaquaductal grey, lateral
nTPM: 6.4
2140 Male, age 76, both hemispheres 7.9
2272 Male, age 74, both hemispheres 5.7
2053 Male, age 18, unknown 5.6
Pretectal area
nTPM: 30.0
2667 Female, age 75, unknown 65.1
1944 Female, age 72, unknown 56.8
1817 Female, age 42, unknown 56.1
1816 Male, age 51, unknown 51.2
2007 Male, age 72, unknown 44.4
1815 Male, age 53, unknown 27.5
2224 Female, age 72, unknown 13.0
2825 Male, age 18, unknown 8.4
2407 Male, age 75, both hemispheres 6.6
2316 Male, age 76, right hemisphere 0.7
2273 Male, age 74, both hemispheres 0.0
Red nucleus
nTPM: 4.2
2785 Male, age 18, unknown 22.1
1865 Male, age 51, unknown 6.3
1821 Female, age 72, unknown 5.3
2588 Male, age 74, left hemisphere 5.3
2584 Male, age 75, left hemisphere 5.0
2227 Male, age 72, unknown 3.1
2769 Male, age 72, unknown 2.4
1954 Female, age 42, unknown 1.4
1904 Male, age 53, unknown 0.0
2503 Female, age 72, unknown 0.0
2725 Female, age 75, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 28.2
2665 Male, age 74, both hemispheres 65.1
1889 Female, age 72, unknown 53.9
1941 Male, age 53, unknown 46.0
1916 Female, age 42, unknown 43.9
1851 Male, age 51, unknown 29.2
2699 Male, age 18, unknown 15.5
2241 Male, age 72, unknown 15.3
2409 Female, age 72, unknown 13.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 17.0
1895 Male, age 76, right hemisphere 36.4
2087 Female, age 72, unknown 28.9
1796 Male, age 53, unknown 27.7
2668 Female, age 75, unknown 25.3
2261 Male, age 18, unknown 18.1
2664 Male, age 75, both hemispheres 10.0
1839 Male, age 51, unknown 8.7
1913 Female, age 42, unknown 7.5
2587 Male, age 74, left hemisphere 7.5
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 23.3
2218 Male, age 76, both hemispheres 60.6
2410 Female, age 72, unknown 23.9
1915 Female, age 42, unknown 20.8
1942 Male, age 51, unknown 16.8
2223 Female, age 72, unknown 13.7
2021 Male, age 53, unknown 4.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 90.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.3
Samples: 139

Max nTPM: 403.8
Min nTPM: 6.3
Std nTPM: 71.3
Median nTPM: 74.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 403.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 380.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 281.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 243.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 234.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 222.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 220.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 193.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 192.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 188.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 183.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.5
FF:10158-103A5 76 years, female 22.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 518.2
Pig sample Sample description nTPM
Midbrain
nTPM: 440.4
Samples: 4

Max nTPM: 852.1
Min nTPM: 155.3
Sample A Female 155.3
Sample B Female 267.2
Sample C Male 852.1
Sample D Male 487.0
Periaqueductal gray
nTPM: 274.0
Samples: 3

Max nTPM: 371.5
Min nTPM: 216.8
Sample B Female 216.8
Sample C Male 371.5
Sample D Male 233.6
Substantia nigra
nTPM: 364.7
Samples: 4

Max nTPM: 537.6
Min nTPM: 127.2
Sample A Female 537.6
Sample B Female 264.1
Sample C Male 530.0
Sample D Male 127.2
Superior colliculi
nTPM: 518.2
Samples: 4

Max nTPM: 725.0
Min nTPM: 329.0
Sample A Female 539.6
Sample B Female 329.0
Sample C Male 725.0
Sample D Male 479.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 453.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 453.0
Samples: 4

Max nTPM: 468.0
Min nTPM: 437.3
Sample A Male 437.3
Sample B Male 443.4
Sample C Female 468.0
Sample D Female 463.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.9
68798025 Antisense, RP_050215_01_F04, Mouse strain C57BL/6J (56 days, male) 21.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.