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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA:9.6 nTPM
GTEx:6.6 nTPM
FANTOM5:15.1 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:3.8 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.7
2481 Female, age 94, left hemisphere 8.7
2846 Female, age 79, unknown 8.7
2290 Female, age 72, unknown 8.3
1857 Female, age 85, left hemisphere 8.0
1854 Male, age 80, left hemisphere 7.5
2288 Male, age 75, left hemisphere 7.2
1781 Male, age 74, unknown 6.8
2289 Male, age 61, right hemisphere 6.6
Claustrum
nTPM: 7.1
2645 Female, age 72, unknown 8.6
2292 Female, age 85, both hemispheres 7.4
2568 Male, age 61, both hemispheres 7.3
2284 Female, age 91, both hemispheres 7.2
1956 Male, age 74, unknown 6.8
2196 Female, age 79, unknown 6.8
2198 Male, age 80, both hemispheres 6.8
2392 Female, age 94, both hemispheres 6.6
2491 Male, age 75, both hemispheres 6.6
Globus pallidus, externus
nTPM: 8.9
2646 Male, age 61, right hemisphere 10.4
2567 Female, age 72, unknown 9.4
1996 Male, age 80, right hemisphere 8.7
2772 Female, age 79, unknown 8.6
2395 Male, age 75, both hemispheres 7.3
Globus pallidus, internus
nTPM: 8.3
2483 Female, age 94, right hemisphere 9.3
2287 Male, age 75, right hemisphere 8.8
1818 Male, age 74, unknown 8.6
2037 Male, age 80, right hemisphere 7.9
2111 Female, age 85, right hemisphere 7.9
2566 Female, age 72, unknown 7.9
2778 Female, age 91, both hemispheres 7.5
Nucleus accumbens
nTPM: 6.6
2286 Male, age 75, left hemisphere 7.5
1806 Female, age 85, left hemisphere 7.2
1783 Male, age 74, unknown 7.0
2698 Female, age 72, unknown 6.7
2391 Female, age 94, left hemisphere 6.6
1856 Female, age 91, right hemisphere 6.3
2732 Male, age 80, right hemisphere 6.3
2824 Male, age 61, right hemisphere 5.6
Nucleus basalis of Meynert
nTPM: 9.6
2569 Male, age 61, both hemispheres 12.6
2484 Female, age 94, left hemisphere 11.2
2393 Male, age 80, right hemisphere 7.5
2821 Male, age 75, both hemispheres 7.2
Nucleus of the diagonal band
nTPM: 6.1
1979 Male, age 74, unknown 6.8
2029 Male, age 61, right hemisphere 6.5
2195 Female, age 85, both hemispheres 6.0
1812 Female, age 91, both hemispheres 5.7
2775 Male, age 80, right hemisphere 5.7
Olfactory tubercle
nTPM: 6.1
1998 Female, age 91, both hemispheres 6.5
2856 Male, age 75, right hemisphere 6.2
1846 Male, age 80, right hemisphere 6.1
2487 Female, age 94, left hemisphere 5.5
Putamen
nTPM: 8.1
2489 Female, age 72, unknown 9.9
2647 Male, age 75, left hemisphere 8.8
2466 Female, age 79, unknown 8.1
1829 Male, age 74, unknown 7.9
1838 Male, age 80, right hemisphere 7.6
2482 Female, age 94, left hemisphere 7.4
1937 Female, age 91, right hemisphere 7.0
Septal nuclei
nTPM: 6.2
2394 Male, age 61, left hemisphere 7.2
2199 Male, age 80, right hemisphere 6.8
2031 Female, age 72, unknown 6.4
1960 Male, age 74, unknown 6.2
2059 Female, age 85, both hemispheres 6.1
2009 Female, age 91, both hemispheres 5.7
2629 Female, age 94, right hemisphere 5.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.0
Samples: 246

Max nTPM: 21.8
Min nTPM: 0.4
Std nTPM: 3.3
Median nTPM: 4.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 21.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 21.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 19.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 16.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 14.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 13.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 13.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 13.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 12.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 11.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.2
Samples: 246

Max nTPM: 46.5
Min nTPM: 0.4
Std nTPM: 4.8
Median nTPM: 3.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 46.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 45.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 21.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 19.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 17.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 16.7
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 14.9
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 13.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 11.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 11.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 10.3
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Brain - Putamen (basal ganglia)
Average nTPM: 6.6
Samples: 205

Max nTPM: 38.6
Min nTPM: 0.6
Std nTPM: 4.4
Median nTPM: 5.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 38.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 26.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 20.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 18.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 18.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 16.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 16.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 15.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 14.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 14.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 14.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.7
FF:10164-103B2 76 years, female 10.7
Globus pallidus
Scaled Tags Per Million: 13.4
FF:10161-103A8 76 years, female 16.6
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 15.0
FF:10037-101F1 23-56 years, mixed 15.0
Putamen
Scaled Tags Per Million: 15.1
FF:10176-103C5 60 years, female 15.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.1
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 3.8
Sample C Male 5.1
Sample D Male 5.0
Putamen
nTPM: 5.0
Samples: 4

Max nTPM: 6.6
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 4.3
Sample C Male 5.3
Sample D Male 6.6
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 2.8
Sample C Male 4.0
Sample D Male 2.8
Ventral pallidum
nTPM: 3.6
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 3.1
Sample C Male 5.1
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.8
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.2
Sample A Male 3.2
Sample B Male 3.2
Sample C Female 4.1
Sample D Female 4.8
Septum
nTPM: 2.5
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.0
Sample A Male 2.2
Sample B Male 3.0
Sample C Female 2.0
Sample D Female 2.6
Ventral forebrain
nTPM: 3.3
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.8
Sample A Male 3.0
Sample B Male 2.8
Sample C Female 3.7
Sample D Female 3.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
69169481 Antisense, RP_050321_03_F06, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.2
69169481 Antisense, RP_050321_03_F06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.