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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA:26.4 nTPM
GTEx:12.8 nTPM
FANTOM5:67.8 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:40.9 nTPM
Allen mouse:4.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 26.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.0
2288 Male, age 75, left hemisphere 20.1
2846 Female, age 79, unknown 18.5
1781 Male, age 74, unknown 17.0
2481 Female, age 94, left hemisphere 15.7
1854 Male, age 80, left hemisphere 15.2
2290 Female, age 72, unknown 14.9
2289 Male, age 61, right hemisphere 13.5
1857 Female, age 85, left hemisphere 13.3
Claustrum
nTPM: 25.2
2392 Female, age 94, both hemispheres 31.2
1956 Male, age 74, unknown 29.8
2292 Female, age 85, both hemispheres 27.7
2198 Male, age 80, both hemispheres 25.0
2491 Male, age 75, both hemispheres 24.2
2284 Female, age 91, both hemispheres 23.8
2568 Male, age 61, both hemispheres 23.4
2196 Female, age 79, unknown 21.5
2645 Female, age 72, unknown 19.9
Globus pallidus, externus
nTPM: 25.2
2395 Male, age 75, both hemispheres 29.9
1996 Male, age 80, right hemisphere 27.4
2772 Female, age 79, unknown 27.4
2567 Female, age 72, unknown 21.0
2646 Male, age 61, right hemisphere 20.1
Globus pallidus, internus
nTPM: 26.4
2287 Male, age 75, right hemisphere 34.1
2111 Female, age 85, right hemisphere 31.2
2778 Female, age 91, both hemispheres 29.4
2483 Female, age 94, right hemisphere 23.3
2037 Male, age 80, right hemisphere 23.0
1818 Male, age 74, unknown 22.6
2566 Female, age 72, unknown 21.1
Nucleus accumbens
nTPM: 18.2
2391 Female, age 94, left hemisphere 23.2
2286 Male, age 75, left hemisphere 21.2
2732 Male, age 80, right hemisphere 20.7
2698 Female, age 72, unknown 18.8
1806 Female, age 85, left hemisphere 16.3
1783 Male, age 74, unknown 16.0
1856 Female, age 91, right hemisphere 14.9
2824 Male, age 61, right hemisphere 14.5
Nucleus basalis of Meynert
nTPM: 17.8
2821 Male, age 75, both hemispheres 20.2
2569 Male, age 61, both hemispheres 17.8
2393 Male, age 80, right hemisphere 17.5
2484 Female, age 94, left hemisphere 15.8
Nucleus of the diagonal band
nTPM: 19.4
2775 Male, age 80, right hemisphere 21.4
2029 Male, age 61, right hemisphere 20.6
1812 Female, age 91, both hemispheres 20.2
2195 Female, age 85, both hemispheres 19.4
1979 Male, age 74, unknown 15.3
Olfactory tubercle
nTPM: 20.6
1998 Female, age 91, both hemispheres 22.2
2487 Female, age 94, left hemisphere 21.8
1846 Male, age 80, right hemisphere 19.6
2856 Male, age 75, right hemisphere 18.9
Putamen
nTPM: 17.4
1829 Male, age 74, unknown 19.2
2482 Female, age 94, left hemisphere 18.8
2466 Female, age 79, unknown 18.3
1937 Female, age 91, right hemisphere 18.1
2647 Male, age 75, left hemisphere 18.0
2489 Female, age 72, unknown 15.8
1838 Male, age 80, right hemisphere 13.7
Septal nuclei
nTPM: 19.1
2031 Female, age 72, unknown 21.8
1960 Male, age 74, unknown 20.0
2629 Female, age 94, right hemisphere 19.4
2009 Female, age 91, both hemispheres 19.3
2394 Male, age 61, left hemisphere 19.1
2199 Male, age 80, right hemisphere 18.6
2059 Female, age 85, both hemispheres 15.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.2
Samples: 246

Max nTPM: 25.6
Min nTPM: 3.9
Std nTPM: 3.7
Median nTPM: 9.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 25.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 25.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 25.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 24.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 24.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 19.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 19.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 18.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 18.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 18.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 17.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.9
Samples: 246

Max nTPM: 41.9
Min nTPM: 3.4
Std nTPM: 4.1
Median nTPM: 8.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 41.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 27.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 26.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 24.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 22.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 19.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 19.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 18.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 18.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 17.3
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 16.9
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Brain - Putamen (basal ganglia)
Average nTPM: 12.8
Samples: 205

Max nTPM: 32.9
Min nTPM: 5.0
Std nTPM: 4.5
Median nTPM: 12.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 32.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 32.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 27.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 25.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 25.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 23.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 22.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 22.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 22.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 21.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 21.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.2
FF:10164-103B2 76 years, female 37.2
Globus pallidus
Scaled Tags Per Million: 67.8
FF:10161-103A8 76 years, female 69.3
FF:10175-103C4 60 years, female 66.3
Nucleus accumbens
Scaled Tags Per Million: 57.5
FF:10037-101F1 23-56 years, mixed 57.5
Putamen
Scaled Tags Per Million: 33.5
FF:10176-103C5 60 years, female 33.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.4
Pig sample Sample description nTPM
Caudate
nTPM: 15.8
Samples: 4

Max nTPM: 17.8
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 14.6
Sample C Male 17.8
Sample D Male 16.8
Putamen
nTPM: 20.6
Samples: 4

Max nTPM: 25.9
Min nTPM: 15.4
Sample A Female 21.4
Sample B Female 15.4
Sample C Male 25.9
Sample D Male 19.6
Septum
nTPM: 23.4
Samples: 4

Max nTPM: 41.0
Min nTPM: 16.8
Sample A Female 18.0
Sample B Female 17.8
Sample C Male 41.0
Sample D Male 16.8
Ventral pallidum
nTPM: 21.3
Samples: 4

Max nTPM: 34.7
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 17.9
Sample C Male 34.7
Sample D Male 18.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.1
Samples: 4

Max nTPM: 42.6
Min nTPM: 38.2
Sample A Male 42.6
Sample B Male 38.2
Sample C Female 39.8
Sample D Female 39.9
Septum
nTPM: 40.9
Samples: 4

Max nTPM: 43.9
Min nTPM: 36.9
Sample A Male 41.0
Sample B Male 36.9
Sample C Female 43.9
Sample D Female 41.7
Ventral forebrain
nTPM: 36.2
Samples: 4

Max nTPM: 37.5
Min nTPM: 33.3
Sample A Male 33.3
Sample B Male 37.5
Sample C Female 37.1
Sample D Female 36.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.1
70634224 Antisense, RP_050725_01_E07, Mouse strain C57BL/6J (56 days, male) 7.3
638704 Antisense, RP_040831_02_C01, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 4.9
70634224 Antisense, RP_050725_01_E07, Mouse strain C57BL/6J (56 days, male) 7.9
638704 Antisense, RP_040831_02_C01, Mouse strain C57BL/6J (56 days, male) 1.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.