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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:24.8 nTPM
FANTOM5:55.8 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:31.6 nTPM
Allen mouse:1.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018400
Glial cells High
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.1
1857 Female, age 85, left hemisphere 15.7
1854 Male, age 80, left hemisphere 15.1
1781 Male, age 74, unknown 14.7
2290 Female, age 72, unknown 14.5
2289 Male, age 61, right hemisphere 14.2
2846 Female, age 79, unknown 13.4
2481 Female, age 94, left hemisphere 13.0
2288 Male, age 75, left hemisphere 12.5
Claustrum
nTPM: 12.4
2196 Female, age 79, unknown 13.9
2292 Female, age 85, both hemispheres 13.4
2392 Female, age 94, both hemispheres 12.8
1956 Male, age 74, unknown 12.7
2198 Male, age 80, both hemispheres 12.3
2568 Male, age 61, both hemispheres 12.0
2284 Female, age 91, both hemispheres 11.7
2491 Male, age 75, both hemispheres 11.3
2645 Female, age 72, unknown 11.3
Globus pallidus, externus
nTPM: 13.5
1996 Male, age 80, right hemisphere 15.0
2395 Male, age 75, both hemispheres 14.8
2772 Female, age 79, unknown 14.2
2646 Male, age 61, right hemisphere 11.9
2567 Female, age 72, unknown 11.8
Globus pallidus, internus
nTPM: 14.0
2287 Male, age 75, right hemisphere 15.9
2778 Female, age 91, both hemispheres 15.4
2111 Female, age 85, right hemisphere 15.2
2037 Male, age 80, right hemisphere 13.3
2483 Female, age 94, right hemisphere 13.2
1818 Male, age 74, unknown 12.5
2566 Female, age 72, unknown 12.5
Nucleus accumbens
nTPM: 14.6
1856 Female, age 91, right hemisphere 15.8
2698 Female, age 72, unknown 15.2
1806 Female, age 85, left hemisphere 15.0
1783 Male, age 74, unknown 14.7
2732 Male, age 80, right hemisphere 14.7
2824 Male, age 61, right hemisphere 14.6
2286 Male, age 75, left hemisphere 13.9
2391 Female, age 94, left hemisphere 13.0
Nucleus basalis of Meynert
nTPM: 12.9
2393 Male, age 80, right hemisphere 14.0
2821 Male, age 75, both hemispheres 13.3
2484 Female, age 94, left hemisphere 12.9
2569 Male, age 61, both hemispheres 11.4
Nucleus of the diagonal band
nTPM: 12.6
1979 Male, age 74, unknown 14.1
1812 Female, age 91, both hemispheres 13.6
2195 Female, age 85, both hemispheres 12.1
2775 Male, age 80, right hemisphere 12.0
2029 Male, age 61, right hemisphere 11.5
Olfactory tubercle
nTPM: 11.9
1846 Male, age 80, right hemisphere 12.5
2487 Female, age 94, left hemisphere 12.4
1998 Female, age 91, both hemispheres 11.5
2856 Male, age 75, right hemisphere 11.3
Putamen
nTPM: 12.6
1937 Female, age 91, right hemisphere 14.3
1838 Male, age 80, right hemisphere 13.1
2466 Female, age 79, unknown 12.8
1829 Male, age 74, unknown 12.5
2482 Female, age 94, left hemisphere 12.5
2489 Female, age 72, unknown 11.8
2647 Male, age 75, left hemisphere 11.0
Septal nuclei
nTPM: 13.1
2394 Male, age 61, left hemisphere 15.2
2199 Male, age 80, right hemisphere 13.9
2629 Female, age 94, right hemisphere 13.7
2031 Female, age 72, unknown 13.1
2009 Female, age 91, both hemispheres 12.6
2059 Female, age 85, both hemispheres 11.9
1960 Male, age 74, unknown 11.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.5
Samples: 246

Max nTPM: 72.6
Min nTPM: 5.6
Std nTPM: 7.1
Median nTPM: 17.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 72.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 48.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 36.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 35.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 34.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 34.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 33.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 33.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 32.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 32.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 32.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.8
Samples: 246

Max nTPM: 76.3
Min nTPM: 10.5
Std nTPM: 7.8
Median nTPM: 24.0
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 76.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 50.7
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 50.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 50.1
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 47.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 45.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 43.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 43.7
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 39.8
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 37.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 37.5
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Brain - Putamen (basal ganglia)
Average nTPM: 17.1
Samples: 205

Max nTPM: 52.5
Min nTPM: 6.6
Std nTPM: 7.4
Median nTPM: 15.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 52.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 49.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 43.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 43.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 41.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 37.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 37.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 37.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 36.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 34.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 33.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.2
FF:10164-103B2 76 years, female 46.2
Globus pallidus
Scaled Tags Per Million: 55.8
FF:10175-103C4 60 years, female 85.2
FF:10161-103A8 76 years, female 26.3
Nucleus accumbens
Scaled Tags Per Million: 27.2
FF:10037-101F1 23-56 years, mixed 27.2
Putamen
Scaled Tags Per Million: 48.9
FF:10176-103C5 60 years, female 48.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.8
Sample A Female 5.8
Sample B Female 5.5
Sample C Male 5.3
Sample D Male 3.8
Putamen
nTPM: 3.6
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.9
Sample A Female 3.5
Sample B Female 4.4
Sample C Male 3.7
Sample D Male 2.9
Septum
nTPM: 4.9
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.8
Sample A Female 6.1
Sample B Female 4.6
Sample C Male 3.8
Sample D Male 5.1
Ventral pallidum
nTPM: 4.8
Samples: 4

Max nTPM: 6.4
Min nTPM: 2.4
Sample A Female 6.2
Sample B Female 6.4
Sample C Male 2.4
Sample D Male 4.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 31.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.6
Samples: 4

Max nTPM: 36.1
Min nTPM: 25.0
Sample A Male 32.0
Sample B Male 33.1
Sample C Female 25.0
Sample D Female 36.1
Septum
nTPM: 16.7
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.9
Sample A Male 19.2
Sample B Male 17.3
Sample C Female 15.2
Sample D Female 14.9
Ventral forebrain
nTPM: 27.8
Samples: 4

Max nTPM: 30.5
Min nTPM: 25.4
Sample A Male 28.8
Sample B Male 25.4
Sample C Female 26.6
Sample D Female 30.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
72008120 Antisense, RP_051017_01_B09, Mouse strain C57BL/6J (56 days, male) 2.2
168 Antisense, RP_Baylor_102649, Mouse strain C57BL/6J (56 days, male) 2.0
68300986 Antisense, RP_041129_02_E09, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.6
168 Antisense, RP_Baylor_102649, Mouse strain C57BL/6J (56 days, male) 0.7
68300986 Antisense, RP_041129_02_E09, Mouse strain C57BL/6J (56 days, male) 0.7
72008120 Antisense, RP_051017_01_B09, Mouse strain C57BL/6J (56 days, male) 0.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.