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ANKRD40
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:98.5 nTPM
HPA:98.5 nTPM
GTEx:113.8 nTPM
FANTOM5:92.6 Scaled Tags Per Million
Pig:30.6 nTPM
Mouse:76.8 nTPM
Allen mouse:6.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021668Antibody HPA021759
Glial cells LowHigh
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 98.5
Sample id Sample description nTPM
Hippocampus
nTPM: 92.3
2529 Female, age 94, left hemisphere 97.2
1911 Female, age 85, right hemisphere 93.0
2621 Female, age 67, right hemisphere 92.6
1855 Male, age 76, left hemisphere 91.1
1898 Male, age 80, left hemisphere 90.7
2148 Female, age 91, left hemisphere 89.3
Dentate gyrus
nTPM: 91.9
2530 Female, age 94, left hemisphere 122.0
2010 Male, age 76, both hemispheres 94.9
2531 Female, age 67, both hemispheres 89.9
2246 Female, age 85, both hemispheres 86.5
2528 Male, age 74, both hemispheres 80.9
1927 Female, age 91, both hemispheres 77.0
Entorhinal gyrus
nTPM: 95.8
2686 Male, age 75, right hemisphere 115.9
2117 Female, age 91, right hemisphere 112.1
2764 Male, age 80, right hemisphere 92.7
1938 Female, age 85, left hemisphere 87.3
2613 Female, age 94, left hemisphere 85.1
1787 Male, age 76, left hemisphere 81.5
Hippocampus, CA1
nTPM: 81.1
2082 Female, age 91, right hemisphere 86.1
1873 Female, age 85, both hemispheres 84.2
2527 Male, age 74, both hemispheres 83.9
2749 Male, age 80, left hemisphere 76.4
2045 Male, age 76, both hemispheres 74.9
Hippocampus, CA2
nTPM: 88.8
1963 Male, age 80, left hemisphere 102.1
2437 Female, age 94, left hemisphere 91.4
2113 Female, age 91, right hemisphere 90.7
1940 Female, age 85, left hemisphere 86.5
2249 Male, age 74, both hemispheres 83.3
1892 Male, age 76, both hemispheres 78.9
Hippocampus, CA3
nTPM: 80.7
1891 Female, age 85, both hemispheres 100.4
2861 Female, age 67, both hemispheres 84.8
1867 Male, age 76, both hemispheres 81.9
2137 Male, age 80, left hemisphere 73.8
2620 Female, age 94, left hemisphere 72.7
2436 Male, age 74, both hemispheres 70.2
Parahippocampal cortex
nTPM: 86.4
2692 Male, age 74, both hemispheres 101.0
2532 Female, age 72, left hemisphere 93.6
2018 Male, age 76, both hemispheres 89.1
1990 Female, age 91, right hemisphere 88.6
2622 Female, age 67, right hemisphere 87.8
1850 Male, age 80, both hemispheres 87.5
2245 Female, age 91, both hemispheres 85.8
1933 Female, age 85, both hemispheres 81.5
2693 Female, age 94, both hemispheres 75.4
2250 Female, age 67, right hemisphere 73.2
Perirhinal gyrus
nTPM: 76.7
2848 Male, age 76, right hemisphere 81.2
1794 Male, age 80, right hemisphere 78.2
1841 Female, age 85, right hemisphere 77.1
1847 Female, age 91, left hemisphere 76.1
2521 Female, age 94, right hemisphere 70.9
Subiculum
nTPM: 98.5
2042 Male, age 76, both hemispheres 112.8
1901 Male, age 80, both hemispheres 103.2
2438 Female, age 94, left hemisphere 103.0
1977 Female, age 85, both hemispheres 93.0
2729 Female, age 91, right hemisphere 91.4
2619 Male, age 74, both hemispheres 87.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 113.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 113.8
Samples: 197

Max nTPM: 386.4
Min nTPM: 22.3
Std nTPM: 63.2
Median nTPM: 96.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 386.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 361.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 349.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 302.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 298.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 295.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 287.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 261.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 252.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 234.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 232.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.6
FF:10153-102I9 76 years, female 123.6
FF:10169-103B7 60 years, female 61.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.7
Samples: 4

Max nTPM: 39.7
Min nTPM: 19.8
Sample A Female 39.7
Sample B Female 26.3
Sample C Male 36.9
Sample D Male 19.8
Entorhinal cortex
nTPM: 27.8
Samples: 4

Max nTPM: 30.7
Min nTPM: 25.7
Sample A Female 26.9
Sample B Female 30.7
Sample C Male 28.0
Sample D Male 25.7
Subiculum
nTPM: 26.5
Samples: 4

Max nTPM: 32.8
Min nTPM: 22.8
Sample A Female 32.8
Sample B Female 25.5
Sample C Male 22.8
Sample D Male 24.7
Ventral hippocampus
nTPM: 26.6
Samples: 4

Max nTPM: 29.4
Min nTPM: 20.0
Sample A Female 28.0
Sample B Female 20.0
Sample C Male 29.4
Sample D Male 28.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 76.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 76.8
Samples: 4

Max nTPM: 81.9
Min nTPM: 72.0
Sample A Male 81.9
Sample B Male 79.5
Sample C Female 73.8
Sample D Female 72.0
Hippocampal formation
nTPM: 76.3
Samples: 4

Max nTPM: 82.6
Min nTPM: 70.5
Sample A Male 76.4
Sample B Male 70.5
Sample C Female 82.6
Sample D Female 75.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.2
67764916 Antisense, RP_040916_02_C12, Mouse strain C57BL/6J (56 days, male) 11.1
70793941 Antisense, RP_050712_01_A09, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.