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MMS19
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:47.1 nTPM
HPA:47.1 nTPM
GTEx:31.9 nTPM
FANTOM5:50.1 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:4.2 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA056299
Glial cells Medium
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.7
1781 Male, age 74, unknown 45.6
2481 Female, age 94, left hemisphere 45.5
2846 Female, age 79, unknown 45.4
2289 Male, age 61, right hemisphere 44.9
2288 Male, age 75, left hemisphere 44.2
1857 Female, age 85, left hemisphere 44.1
1854 Male, age 80, left hemisphere 43.8
2290 Female, age 72, unknown 43.8
Claustrum
nTPM: 46.2
2198 Male, age 80, both hemispheres 48.6
2284 Female, age 91, both hemispheres 47.0
2568 Male, age 61, both hemispheres 46.9
2292 Female, age 85, both hemispheres 46.2
1956 Male, age 74, unknown 46.0
2491 Male, age 75, both hemispheres 46.0
2645 Female, age 72, unknown 46.0
2196 Female, age 79, unknown 44.8
2392 Female, age 94, both hemispheres 44.4
Globus pallidus, externus
nTPM: 44.2
2395 Male, age 75, both hemispheres 44.6
2567 Female, age 72, unknown 44.6
2772 Female, age 79, unknown 44.4
2646 Male, age 61, right hemisphere 44.3
1996 Male, age 80, right hemisphere 43.1
Globus pallidus, internus
nTPM: 44.5
2483 Female, age 94, right hemisphere 46.3
2287 Male, age 75, right hemisphere 45.8
2111 Female, age 85, right hemisphere 44.3
2566 Female, age 72, unknown 44.1
2778 Female, age 91, both hemispheres 43.7
2037 Male, age 80, right hemisphere 43.6
1818 Male, age 74, unknown 43.5
Nucleus accumbens
nTPM: 44.7
1783 Male, age 74, unknown 46.3
1806 Female, age 85, left hemisphere 45.7
1856 Female, age 91, right hemisphere 45.5
2286 Male, age 75, left hemisphere 44.7
2698 Female, age 72, unknown 43.9
2391 Female, age 94, left hemisphere 43.8
2824 Male, age 61, right hemisphere 43.8
2732 Male, age 80, right hemisphere 43.6
Nucleus basalis of Meynert
nTPM: 43.2
2569 Male, age 61, both hemispheres 45.1
2484 Female, age 94, left hemisphere 42.9
2393 Male, age 80, right hemisphere 42.5
2821 Male, age 75, both hemispheres 42.1
Nucleus of the diagonal band
nTPM: 46.3
2775 Male, age 80, right hemisphere 48.7
2029 Male, age 61, right hemisphere 47.8
1812 Female, age 91, both hemispheres 45.7
2195 Female, age 85, both hemispheres 45.7
1979 Male, age 74, unknown 43.4
Olfactory tubercle
nTPM: 47.1
1846 Male, age 80, right hemisphere 47.7
1998 Female, age 91, both hemispheres 47.5
2487 Female, age 94, left hemisphere 46.8
2856 Male, age 75, right hemisphere 46.5
Putamen
nTPM: 44.1
1838 Male, age 80, right hemisphere 45.7
2466 Female, age 79, unknown 44.5
2647 Male, age 75, left hemisphere 44.3
1937 Female, age 91, right hemisphere 44.1
2482 Female, age 94, left hemisphere 44.1
2489 Female, age 72, unknown 43.2
1829 Male, age 74, unknown 42.8
Septal nuclei
nTPM: 45.8
2031 Female, age 72, unknown 48.5
1960 Male, age 74, unknown 47.9
2009 Female, age 91, both hemispheres 45.8
2629 Female, age 94, right hemisphere 45.7
2059 Female, age 85, both hemispheres 45.0
2394 Male, age 61, left hemisphere 44.8
2199 Male, age 80, right hemisphere 42.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.7
Samples: 246

Max nTPM: 53.1
Min nTPM: 18.1
Std nTPM: 5.1
Median nTPM: 28.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 53.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 44.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 44.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 42.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 41.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 40.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 38.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 38.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 38.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 37.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 37.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.9
Samples: 246

Max nTPM: 60.3
Min nTPM: 15.5
Std nTPM: 7.1
Median nTPM: 30.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 60.3
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 53.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 52.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 51.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 51.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 50.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 50.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 49.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 48.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 47.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 46.9
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Brain - Putamen (basal ganglia)
Average nTPM: 30.4
Samples: 205

Max nTPM: 48.5
Min nTPM: 14.7
Std nTPM: 5.2
Median nTPM: 30.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 48.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 44.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 44.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 43.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 42.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 41.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 41.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 39.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 39.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 39.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 38.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 50.1
FF:10164-103B2 76 years, female 50.1
Globus pallidus
Scaled Tags Per Million: 47.1
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 38.3
Nucleus accumbens
Scaled Tags Per Million: 45.7
FF:10037-101F1 23-56 years, mixed 45.7
Putamen
Scaled Tags Per Million: 48.3
FF:10176-103C5 60 years, female 48.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Caudate
nTPM: 11.5
Samples: 4

Max nTPM: 12.4
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 12.3
Sample C Male 12.4
Sample D Male 11.1
Putamen
nTPM: 11.9
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.6
Sample A Female 13.0
Sample B Female 10.6
Sample C Male 11.7
Sample D Male 12.3
Septum
nTPM: 11.8
Samples: 4

Max nTPM: 12.7
Min nTPM: 11.2
Sample A Female 11.7
Sample B Female 11.2
Sample C Male 12.7
Sample D Male 11.4
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 15.2
Min nTPM: 10.9
Sample A Female 11.2
Sample B Female 10.9
Sample C Male 15.2
Sample D Male 12.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.2
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.2
Sample A Male 2.2
Sample B Male 4.1
Sample C Female 5.1
Sample D Female 5.3
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 6.5
Min nTPM: 2.0
Sample A Male 2.0
Sample B Male 6.5
Sample C Female 4.5
Sample D Female 2.5
Ventral forebrain
nTPM: 3.8
Samples: 4

Max nTPM: 5.1
Min nTPM: 1.8
Sample A Male 1.8
Sample B Male 3.8
Sample C Female 5.1
Sample D Female 4.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
68797709 Antisense, RP_050215_01_A03, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.1
68797709 Antisense, RP_050215_01_A03, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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