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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:192.0 nTPM
HPA:192.0 nTPM
GTEx:188.8 nTPM
FANTOM5:58.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 192.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 177.9
2828 Female, age 72, unknown 193.5
2586 Male, age 75, left hemisphere 193.4
2666 Male, age 74, left hemisphere 180.0
1833 Male, age 53, unknown 179.7
1870 Female, age 42, unknown 179.7
1827 Male, age 72, unknown 175.5
1830 Male, age 51, unknown 175.5
2411 Female, age 72, unknown 172.5
2019 Male, age 18, unknown 166.5
2219 Male, age 76, both hemispheres 162.5
Dorsal raphe nucleus
nTPM: 192.0
2016 Female, age 72, unknown 202.4
2047 Male, age 72, unknown 195.8
2298 Female, age 72, unknown 193.1
1828 Male, age 53, unknown 188.9
2750 Male, age 76, both hemispheres 179.7
Inferior colliculus
nTPM: 184.0
2849 Male, age 72, unknown 187.2
1890 Male, age 53, unknown 185.4
1848 Female, age 42, unknown 183.8
2097 Female, age 72, unknown 179.4
Median raphe nucleus
nTPM: 176.1
2220 Male, age 76, midline 176.1
Pedunculopontine tegmental nucleus
nTPM: 181.6
2338 Male, age 61, both hemispheres 189.2
2334 Male, age 80, both hemispheres 182.0
1921 Female, age 85, both hemispheres 173.6
Periaquaductal grey, anterior
nTPM: 179.2
1795 Male, age 51, unknown 183.6
2502 Female, age 75, unknown 181.3
1947 Male, age 18, unknown 172.7
Periaquaductal grey, dorsal
nTPM: 188.9
2850 Male, age 76, both hemispheres 200.0
1840 Male, age 53, unknown 190.5
1831 Male, age 72, unknown 183.2
2464 Female, age 72, unknown 181.7
Periaquaductal grey, lateral
nTPM: 187.8
2140 Male, age 76, both hemispheres 192.9
2053 Male, age 18, unknown 189.4
2272 Male, age 74, both hemispheres 181.1
Pretectal area
nTPM: 177.2
2825 Male, age 18, unknown 189.1
2224 Female, age 72, unknown 186.1
2273 Male, age 74, both hemispheres 183.0
2316 Male, age 76, right hemisphere 181.4
2667 Female, age 75, unknown 178.4
1817 Female, age 42, unknown 177.6
1815 Male, age 53, unknown 175.8
1944 Female, age 72, unknown 174.7
2407 Male, age 75, both hemispheres 169.4
1816 Male, age 51, unknown 168.9
2007 Male, age 72, unknown 164.8
Red nucleus
nTPM: 182.7
2227 Male, age 72, unknown 189.2
2769 Male, age 72, unknown 188.6
1821 Female, age 72, unknown 188.2
1954 Female, age 42, unknown 188.1
2503 Female, age 72, unknown 185.4
1904 Male, age 53, unknown 185.1
1865 Male, age 51, unknown 184.9
2823 Male, age 76, right hemisphere 184.4
2588 Male, age 74, left hemisphere 180.8
2725 Female, age 75, unknown 180.2
2785 Male, age 18, unknown 169.9
2584 Male, age 75, left hemisphere 167.6
Substantia nigra
nTPM: 187.4
2699 Male, age 18, unknown 221.9
2665 Male, age 74, both hemispheres 196.5
1916 Female, age 42, unknown 194.9
1851 Male, age 51, unknown 191.7
2590 Female, age 75, unknown 183.0
2583 Male, age 75, right hemisphere 180.8
2409 Female, age 72, unknown 179.5
2241 Male, age 72, unknown 175.7
1889 Female, age 72, unknown 175.6
1941 Male, age 53, unknown 174.8
Superior colliculus
nTPM: 179.5
1995 Male, age 72, unknown 193.4
1913 Female, age 42, unknown 182.7
2587 Male, age 74, left hemisphere 182.0
1796 Male, age 53, unknown 180.3
2668 Female, age 75, unknown 179.5
2087 Female, age 72, unknown 178.6
1839 Male, age 51, unknown 177.0
2261 Male, age 18, unknown 174.8
1895 Male, age 76, right hemisphere 174.0
2664 Male, age 75, both hemispheres 172.5
Ventral tegmental area
nTPM: 186.6
1915 Female, age 42, unknown 195.0
2021 Male, age 53, unknown 191.1
1942 Male, age 51, unknown 187.4
2410 Female, age 72, unknown 184.3
2218 Male, age 76, both hemispheres 181.1
2223 Female, age 72, unknown 180.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 188.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.8
Samples: 139

Max nTPM: 664.5
Min nTPM: 30.7
Std nTPM: 87.9
Median nTPM: 165.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 664.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 466.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 429.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 426.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 422.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 392.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 361.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 344.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 337.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 326.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 325.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.0
FF:10158-103A5 76 years, female 58.0

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The Human Protein Atlas

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