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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:493.0 nTPM
HPA:493.0 nTPM
GTEx:526.1 nTPM
FANTOM5:697.6 Scaled Tags Per Million
Pig:52.9 nTPM
Mouse:756.4 nTPM
Allen mouse:6.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051428
Glial cells Medium
Neuronal cells Low

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 493.0
Sample id Sample description nTPM
Hippocampus
nTPM: 493.0
2529 Female, age 94, left hemisphere 508.0
1855 Male, age 76, left hemisphere 501.5
1898 Male, age 80, left hemisphere 492.5
2148 Female, age 91, left hemisphere 489.4
2621 Female, age 67, right hemisphere 484.2
1911 Female, age 85, right hemisphere 482.7
Dentate gyrus
nTPM: 480.6
2528 Male, age 74, both hemispheres 506.7
2246 Female, age 85, both hemispheres 488.7
2010 Male, age 76, both hemispheres 488.3
2530 Female, age 94, left hemisphere 474.3
2531 Female, age 67, both hemispheres 464.3
1927 Female, age 91, both hemispheres 461.2
Entorhinal gyrus
nTPM: 471.8
2117 Female, age 91, right hemisphere 503.6
2686 Male, age 75, right hemisphere 475.7
1938 Female, age 85, left hemisphere 472.3
1787 Male, age 76, left hemisphere 469.3
2764 Male, age 80, right hemisphere 462.1
2613 Female, age 94, left hemisphere 447.6
Hippocampus, CA1
nTPM: 481.3
2527 Male, age 74, both hemispheres 515.7
1873 Female, age 85, both hemispheres 488.1
2045 Male, age 76, both hemispheres 480.9
2749 Male, age 80, left hemisphere 462.4
2082 Female, age 91, right hemisphere 459.2
Hippocampus, CA2
nTPM: 474.9
2249 Male, age 74, both hemispheres 501.4
1940 Female, age 85, left hemisphere 475.9
2437 Female, age 94, left hemisphere 474.4
2113 Female, age 91, right hemisphere 470.6
1892 Male, age 76, both hemispheres 464.3
1963 Male, age 80, left hemisphere 463.0
Hippocampus, CA3
nTPM: 474.8
2436 Male, age 74, both hemispheres 499.6
1891 Female, age 85, both hemispheres 490.4
2620 Female, age 94, left hemisphere 472.4
1867 Male, age 76, both hemispheres 466.6
2861 Female, age 67, both hemispheres 461.9
2137 Male, age 80, left hemisphere 457.9
Parahippocampal cortex
nTPM: 471.5
2250 Female, age 67, right hemisphere 500.0
2245 Female, age 91, both hemispheres 475.3
1933 Female, age 85, both hemispheres 474.7
2018 Male, age 76, both hemispheres 474.3
2692 Male, age 74, both hemispheres 471.6
2693 Female, age 94, both hemispheres 465.4
1990 Female, age 91, right hemisphere 465.1
1850 Male, age 80, both hemispheres 463.9
2622 Female, age 67, right hemisphere 462.7
2532 Female, age 72, left hemisphere 461.9
Perirhinal gyrus
nTPM: 462.9
2521 Female, age 94, right hemisphere 469.4
1847 Female, age 91, left hemisphere 465.2
2848 Male, age 76, right hemisphere 462.9
1841 Female, age 85, right hemisphere 462.1
1794 Male, age 80, right hemisphere 454.7
Subiculum
nTPM: 478.2
2729 Female, age 91, right hemisphere 493.1
2042 Male, age 76, both hemispheres 483.8
2619 Male, age 74, both hemispheres 474.9
2438 Female, age 94, left hemisphere 474.1
1901 Male, age 80, both hemispheres 472.3
1977 Female, age 85, both hemispheres 471.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 526.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 526.1
Samples: 197

Max nTPM: 1750.0
Min nTPM: 235.4
Std nTPM: 180.3
Median nTPM: 501.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1750.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1144.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 980.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 957.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 920.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 895.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 882.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 852.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 846.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 831.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 811.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 697.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 697.6
FF:10153-102I9 76 years, female 715.1
FF:10169-103B7 60 years, female 680.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 52.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 52.9
Samples: 4

Max nTPM: 74.3
Min nTPM: 38.5
Sample A Female 74.3
Sample B Female 44.9
Sample C Male 53.8
Sample D Male 38.5
Entorhinal cortex
nTPM: 37.6
Samples: 4

Max nTPM: 45.3
Min nTPM: 29.8
Sample A Female 33.1
Sample B Female 45.3
Sample C Male 42.2
Sample D Male 29.8
Subiculum
nTPM: 42.0
Samples: 4

Max nTPM: 53.1
Min nTPM: 36.8
Sample A Female 53.1
Sample B Female 40.5
Sample C Male 37.7
Sample D Male 36.8
Ventral hippocampus
nTPM: 50.6
Samples: 4

Max nTPM: 60.9
Min nTPM: 41.3
Sample A Female 60.9
Sample B Female 46.0
Sample C Male 54.0
Sample D Male 41.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 756.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 555.7
Samples: 4

Max nTPM: 685.1
Min nTPM: 450.6
Sample A Male 516.4
Sample B Male 450.6
Sample C Female 685.1
Sample D Female 570.6
Hippocampal formation
nTPM: 756.5
Samples: 4

Max nTPM: 852.5
Min nTPM: 640.9
Sample A Male 852.5
Sample B Male 640.9
Sample C Female 744.9
Sample D Female 787.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.2
71836880 Antisense, RP_051017_02_E10, Mouse strain C57BL/6J (56 days, male) 7.1
68632649 Antisense, RP_050125_02_A01, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.