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SLC16A1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.9 nTPM
HPA:35.9 nTPM
GTEx:24.2 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:30.0 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
2019 Male, age 18, unknown 38.9
1833 Male, age 53, unknown 35.5
2411 Female, age 72, unknown 35.2
1870 Female, age 42, unknown 34.7
1830 Male, age 51, unknown 34.5
2219 Male, age 76, both hemispheres 32.9
2828 Female, age 72, unknown 31.1
2666 Male, age 74, left hemisphere 30.5
1827 Male, age 72, unknown 29.6
2586 Male, age 75, left hemisphere 25.0
Dorsal raphe nucleus
nTPM: 33.6
2016 Female, age 72, unknown 37.3
2298 Female, age 72, unknown 34.9
1828 Male, age 53, unknown 33.7
2750 Male, age 76, both hemispheres 32.1
2047 Male, age 72, unknown 29.9
Inferior colliculus
nTPM: 32.2
2097 Female, age 72, unknown 34.9
1848 Female, age 42, unknown 32.7
1890 Male, age 53, unknown 31.0
2849 Male, age 72, unknown 30.3
Median raphe nucleus
nTPM: 31.0
2220 Male, age 76, midline 31.0
Pedunculopontine tegmental nucleus
nTPM: 31.8
2338 Male, age 61, both hemispheres 33.0
2334 Male, age 80, both hemispheres 31.9
1921 Female, age 85, both hemispheres 30.6
Periaquaductal grey, anterior
nTPM: 30.6
2502 Female, age 75, unknown 32.0
1947 Male, age 18, unknown 30.6
1795 Male, age 51, unknown 29.4
Periaquaductal grey, dorsal
nTPM: 33.1
2850 Male, age 76, both hemispheres 39.2
2464 Female, age 72, unknown 33.8
1831 Male, age 72, unknown 31.5
1840 Male, age 53, unknown 27.9
Periaquaductal grey, lateral
nTPM: 32.5
2140 Male, age 76, both hemispheres 35.1
2272 Male, age 74, both hemispheres 34.8
2053 Male, age 18, unknown 27.6
Pretectal area
nTPM: 31.6
1817 Female, age 42, unknown 34.9
1815 Male, age 53, unknown 34.7
2273 Male, age 74, both hemispheres 34.0
2667 Female, age 75, unknown 32.8
2007 Male, age 72, unknown 32.7
2224 Female, age 72, unknown 32.7
2316 Male, age 76, right hemisphere 31.9
2825 Male, age 18, unknown 29.6
1944 Female, age 72, unknown 29.5
1816 Male, age 51, unknown 28.4
2407 Male, age 75, both hemispheres 26.3
Red nucleus
nTPM: 35.9
1954 Female, age 42, unknown 42.1
1865 Male, age 51, unknown 40.0
1904 Male, age 53, unknown 40.0
1821 Female, age 72, unknown 39.6
2503 Female, age 72, unknown 36.5
2785 Male, age 18, unknown 36.4
2769 Male, age 72, unknown 36.1
2823 Male, age 76, right hemisphere 36.0
2227 Male, age 72, unknown 35.9
2588 Male, age 74, left hemisphere 31.7
2725 Female, age 75, unknown 30.2
2584 Male, age 75, left hemisphere 26.4
Substantia nigra
nTPM: 32.3
2665 Male, age 74, both hemispheres 35.2
2409 Female, age 72, unknown 33.7
2699 Male, age 18, unknown 33.5
2241 Male, age 72, unknown 33.0
1916 Female, age 42, unknown 32.5
1941 Male, age 53, unknown 32.5
1851 Male, age 51, unknown 32.2
2590 Female, age 75, unknown 32.0
1889 Female, age 72, unknown 31.0
2583 Male, age 75, right hemisphere 27.3
Superior colliculus
nTPM: 31.8
1995 Male, age 72, unknown 36.5
2587 Male, age 74, left hemisphere 33.9
1913 Female, age 42, unknown 33.6
2087 Female, age 72, unknown 33.2
1895 Male, age 76, right hemisphere 32.6
2668 Female, age 75, unknown 32.3
1839 Male, age 51, unknown 31.1
2261 Male, age 18, unknown 30.9
1796 Male, age 53, unknown 29.1
2664 Male, age 75, both hemispheres 25.1
Ventral tegmental area
nTPM: 32.1
2410 Female, age 72, unknown 34.9
1915 Female, age 42, unknown 32.1
2218 Male, age 76, both hemispheres 31.8
2223 Female, age 72, unknown 31.6
1942 Male, age 51, unknown 31.3
2021 Male, age 53, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.2
Samples: 139

Max nTPM: 101.8
Min nTPM: 6.2
Std nTPM: 18.7
Median nTPM: 17.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 101.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 100.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 95.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 90.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 76.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 70.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 70.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 62.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 57.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 54.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 51.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.0
FF:10158-103A5 76 years, female 94.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.1
Pig sample Sample description nTPM
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 29.9
Min nTPM: 20.5
Sample A Female 29.9
Sample B Female 22.8
Sample C Male 20.7
Sample D Male 20.5
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 24.1
Min nTPM: 18.0
Sample B Female 24.1
Sample C Male 21.0
Sample D Male 18.0
Substantia nigra
nTPM: 20.9
Samples: 4

Max nTPM: 26.6
Min nTPM: 17.1
Sample A Female 26.6
Sample B Female 17.5
Sample C Male 17.1
Sample D Male 22.4
Superior colliculi
nTPM: 26.2
Samples: 4

Max nTPM: 28.1
Min nTPM: 21.5
Sample A Female 27.2
Sample B Female 27.8
Sample C Male 28.1
Sample D Male 21.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 32.3
Min nTPM: 28.1
Sample A Male 29.1
Sample B Male 32.3
Sample C Female 28.1
Sample D Female 30.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68203467 Antisense, RP_041208_01_B02, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.