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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:4.0 nTPM
HPA:4.0 nTPM
GTEx:3.5 nTPM
FANTOM5:8.7 Scaled Tags Per Million
Pig:4.3 nTPM
Mouse:3.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026545
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.5
1781 Male, age 74, unknown 3.8
2288 Male, age 75, left hemisphere 3.7
2289 Male, age 61, right hemisphere 3.7
2290 Female, age 72, unknown 3.5
2481 Female, age 94, left hemisphere 3.5
1854 Male, age 80, left hemisphere 3.4
1857 Female, age 85, left hemisphere 3.3
2846 Female, age 79, unknown 3.3
Claustrum
nTPM: 4.0
2568 Male, age 61, both hemispheres 4.5
2491 Male, age 75, both hemispheres 4.3
2392 Female, age 94, both hemispheres 4.2
2645 Female, age 72, unknown 4.2
2284 Female, age 91, both hemispheres 4.1
2198 Male, age 80, both hemispheres 3.9
1956 Male, age 74, unknown 3.8
2292 Female, age 85, both hemispheres 3.7
2196 Female, age 79, unknown 3.6
Globus pallidus, externus
nTPM: 3.7
2567 Female, age 72, unknown 4.3
2772 Female, age 79, unknown 3.8
2646 Male, age 61, right hemisphere 3.7
2395 Male, age 75, both hemispheres 3.5
1996 Male, age 80, right hemisphere 3.2
Globus pallidus, internus
nTPM: 3.8
2483 Female, age 94, right hemisphere 4.2
1818 Male, age 74, unknown 4.1
2287 Male, age 75, right hemisphere 4.0
2566 Female, age 72, unknown 3.8
2778 Female, age 91, both hemispheres 3.7
2111 Female, age 85, right hemisphere 3.4
2037 Male, age 80, right hemisphere 3.1
Nucleus accumbens
nTPM: 3.5
1856 Female, age 91, right hemisphere 3.9
2286 Male, age 75, left hemisphere 3.6
2391 Female, age 94, left hemisphere 3.6
2824 Male, age 61, right hemisphere 3.6
1783 Male, age 74, unknown 3.4
2698 Female, age 72, unknown 3.3
2732 Male, age 80, right hemisphere 3.3
1806 Female, age 85, left hemisphere 3.2
Nucleus basalis of Meynert
nTPM: 3.7
2484 Female, age 94, left hemisphere 4.3
2821 Male, age 75, both hemispheres 3.6
2569 Male, age 61, both hemispheres 3.5
2393 Male, age 80, right hemisphere 3.3
Nucleus of the diagonal band
nTPM: 3.6
2029 Male, age 61, right hemisphere 3.9
1812 Female, age 91, both hemispheres 3.7
1979 Male, age 74, unknown 3.7
2195 Female, age 85, both hemispheres 3.5
2775 Male, age 80, right hemisphere 3.4
Olfactory tubercle
nTPM: 3.9
1998 Female, age 91, both hemispheres 4.4
1846 Male, age 80, right hemisphere 4.0
2487 Female, age 94, left hemisphere 3.8
2856 Male, age 75, right hemisphere 3.5
Putamen
nTPM: 3.5
2489 Female, age 72, unknown 3.7
2647 Male, age 75, left hemisphere 3.7
1838 Male, age 80, right hemisphere 3.6
2482 Female, age 94, left hemisphere 3.6
2466 Female, age 79, unknown 3.5
1829 Male, age 74, unknown 3.3
1937 Female, age 91, right hemisphere 3.1
Septal nuclei
nTPM: 3.6
2199 Male, age 80, right hemisphere 3.9
1960 Male, age 74, unknown 3.7
2031 Female, age 72, unknown 3.7
2009 Female, age 91, both hemispheres 3.6
2059 Female, age 85, both hemispheres 3.6
2394 Male, age 61, left hemisphere 3.5
2629 Female, age 94, right hemisphere 3.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 5.8
Min nTPM: 1.2
Std nTPM: 0.7
Median nTPM: 3.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 5.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 5.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 5.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 4.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 4.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 4.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 4.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 4.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 4.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.5
Samples: 246

Max nTPM: 5.8
Min nTPM: 1.2
Std nTPM: 0.8
Median nTPM: 3.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 5.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 5.7
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 5.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 5.5
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 5.4
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 5.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 5.3
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 5.2
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 5.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 5.2
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 5.1
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Brain - Putamen (basal ganglia)
Average nTPM: 3.2
Samples: 205

Max nTPM: 5.6
Min nTPM: 1.1
Std nTPM: 0.7
Median nTPM: 3.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 5.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 5.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 5.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 5.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 4.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 4.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 4.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 4.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 4.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 4.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 4.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.3
FF:10164-103B2 76 years, female 6.3
Globus pallidus
Scaled Tags Per Million: 6.8
FF:10175-103C4 60 years, female 7.1
FF:10161-103A8 76 years, female 6.6
Nucleus accumbens
Scaled Tags Per Million: 8.7
FF:10037-101F1 23-56 years, mixed 8.7
Putamen
Scaled Tags Per Million: 7.8
FF:10176-103C5 60 years, female 7.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.3
Pig sample Sample description nTPM
Caudate
nTPM: 3.7
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 4.8
Sample C Male 3.5
Sample D Male 4.2
Putamen
nTPM: 4.3
Samples: 4

Max nTPM: 5.9
Min nTPM: 3.6
Sample A Female 3.8
Sample B Female 3.9
Sample C Male 3.6
Sample D Male 5.9
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 4.3
Sample C Male 4.3
Sample D Male 5.6
Ventral pallidum
nTPM: 4.1
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 4.3
Sample C Male 4.9
Sample D Male 4.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.6
Sample A Male 2.9
Sample B Male 3.0
Sample C Female 3.3
Sample D Female 1.6
Septum
nTPM: 2.2
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.9
Sample A Male 2.3
Sample B Male 2.3
Sample C Female 1.9
Sample D Female 2.1
Ventral forebrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.8
Sample A Male 3.9
Sample B Male 2.8
Sample C Female 3.0
Sample D Female 3.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68148683 Antisense, RP_041116_01_H04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68148683 Antisense, RP_041116_01_H04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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