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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:51.9 nTPM
HPA:51.9 nTPM
GTEx:20.9 nTPM
FANTOM5:212.2 Scaled Tags Per Million
Pig:90.0 nTPM
Mouse:173.1 nTPM
Allen mouse:7.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002455
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.9
Sample id Sample description nTPM
Hippocampus
nTPM: 13.6
1898 Male, age 80, left hemisphere 47.1
1855 Male, age 76, left hemisphere 17.6
2621 Female, age 67, right hemisphere 11.3
1911 Female, age 85, right hemisphere 3.9
2148 Female, age 91, left hemisphere 2.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 14.7
1927 Female, age 91, both hemispheres 26.5
2010 Male, age 76, both hemispheres 22.3
2246 Female, age 85, both hemispheres 16.1
2531 Female, age 67, both hemispheres 14.0
2528 Male, age 74, both hemispheres 7.3
2530 Female, age 94, left hemisphere 2.3
Entorhinal gyrus
nTPM: 19.6
2764 Male, age 80, right hemisphere 41.6
1938 Female, age 85, left hemisphere 30.5
2613 Female, age 94, left hemisphere 17.7
1787 Male, age 76, left hemisphere 11.2
2686 Male, age 75, right hemisphere 9.6
2117 Female, age 91, right hemisphere 7.0
Hippocampus, CA1
nTPM: 28.5
2749 Male, age 80, left hemisphere 67.3
1873 Female, age 85, both hemispheres 24.0
2045 Male, age 76, both hemispheres 22.2
2082 Female, age 91, right hemisphere 19.5
2527 Male, age 74, both hemispheres 9.4
Hippocampus, CA2
nTPM: 16.6
1963 Male, age 80, left hemisphere 38.2
1892 Male, age 76, both hemispheres 33.2
2113 Female, age 91, right hemisphere 13.4
1940 Female, age 85, left hemisphere 8.1
2249 Male, age 74, both hemispheres 4.9
2437 Female, age 94, left hemisphere 1.6
Hippocampus, CA3
nTPM: 20.4
2137 Male, age 80, left hemisphere 65.1
2620 Female, age 94, left hemisphere 23.6
1867 Male, age 76, both hemispheres 12.6
2861 Female, age 67, both hemispheres 10.1
1891 Female, age 85, both hemispheres 8.1
2436 Male, age 74, both hemispheres 3.1
Parahippocampal cortex
nTPM: 21.3
1850 Male, age 80, both hemispheres 55.5
2693 Female, age 94, both hemispheres 41.1
1933 Female, age 85, both hemispheres 27.4
2245 Female, age 91, both hemispheres 25.6
2250 Female, age 67, right hemisphere 17.9
1990 Female, age 91, right hemisphere 13.9
2532 Female, age 72, left hemisphere 12.8
2018 Male, age 76, both hemispheres 11.3
2622 Female, age 67, right hemisphere 6.5
2692 Male, age 74, both hemispheres 1.4
Perirhinal gyrus
nTPM: 51.9
1794 Male, age 80, right hemisphere 71.5
2521 Female, age 94, right hemisphere 54.6
2848 Male, age 76, right hemisphere 46.1
1847 Female, age 91, left hemisphere 45.7
1841 Female, age 85, right hemisphere 41.8
Subiculum
nTPM: 9.2
1901 Male, age 80, both hemispheres 25.9
1977 Female, age 85, both hemispheres 20.9
2729 Female, age 91, right hemisphere 6.1
2042 Male, age 76, both hemispheres 2.6
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.9
Samples: 197

Max nTPM: 61.1
Min nTPM: 5.5
Std nTPM: 10.0
Median nTPM: 19.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 61.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 60.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 51.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 49.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 47.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 40.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 40.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 40.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 40.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 40.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 39.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 212.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 212.2
FF:10169-103B7 60 years, female 299.2
FF:10153-102I9 76 years, female 125.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 90.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 86.4
Samples: 4

Max nTPM: 100.4
Min nTPM: 73.5
Sample A Female 96.8
Sample B Female 100.4
Sample C Male 73.5
Sample D Male 75.0
Entorhinal cortex
nTPM: 83.1
Samples: 4

Max nTPM: 98.6
Min nTPM: 72.8
Sample A Female 81.1
Sample B Female 79.9
Sample C Male 98.6
Sample D Male 72.8
Subiculum
nTPM: 78.2
Samples: 4

Max nTPM: 101.0
Min nTPM: 60.9
Sample A Female 101.0
Sample B Female 72.3
Sample C Male 78.5
Sample D Male 60.9
Ventral hippocampus
nTPM: 90.0
Samples: 4

Max nTPM: 107.5
Min nTPM: 71.9
Sample A Female 83.8
Sample B Female 71.9
Sample C Male 96.9
Sample D Male 107.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 173.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 173.1
Samples: 4

Max nTPM: 190.6
Min nTPM: 161.3
Sample A Male 170.5
Sample B Male 170.1
Sample C Female 161.3
Sample D Female 190.6
Hippocampal formation
nTPM: 130.8
Samples: 4

Max nTPM: 144.0
Min nTPM: 119.2
Sample A Male 144.0
Sample B Male 131.9
Sample C Female 128.2
Sample D Female 119.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.3
69095967 Antisense, RP_050324_02_F04, Mouse strain C57BL/6J (56 days, male) 14.3
71152515 Antisense, RP_050719_04_B07, Mouse strain C57BL/6J (56 days, male) 7.9
73636030 Antisense, RP_050816_03_A05, Mouse strain C57BL/6J (56 days, male) 6.9
71212211 Antisense, RP_050816_03_A05, Mouse strain C57BL/6J (56 days, male) 4.1
71580198 Antisense, RP_050915_04_D08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.