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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:2309.3 nTPM
HPA:2309.3 nTPM
GTEx:2737.8 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:1708.6 nTPM
Mouse:3556.0 nTPM
Allen mouse:30.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051759Antibody HPA056990
Glial cells LowNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 2309.3
Sample id Sample description nTPM
Hippocampus
nTPM: 2269.5
1898 Male, age 80, left hemisphere 2383.2
2529 Female, age 94, left hemisphere 2314.2
1911 Female, age 85, right hemisphere 2269.9
2148 Female, age 91, left hemisphere 2233.8
1855 Male, age 76, left hemisphere 2226.0
2621 Female, age 67, right hemisphere 2189.7
Dentate gyrus
nTPM: 2309.3
2010 Male, age 76, both hemispheres 2470.5
2530 Female, age 94, left hemisphere 2444.4
2528 Male, age 74, both hemispheres 2295.7
2246 Female, age 85, both hemispheres 2238.3
2531 Female, age 67, both hemispheres 2211.7
1927 Female, age 91, both hemispheres 2195.2
Entorhinal gyrus
nTPM: 2226.0
2117 Female, age 91, right hemisphere 2379.9
2686 Male, age 75, right hemisphere 2315.2
1787 Male, age 76, left hemisphere 2264.0
1938 Female, age 85, left hemisphere 2208.2
2764 Male, age 80, right hemisphere 2150.6
2613 Female, age 94, left hemisphere 2037.8
Hippocampus, CA1
nTPM: 2263.2
1873 Female, age 85, both hemispheres 2309.3
2082 Female, age 91, right hemisphere 2308.4
2045 Male, age 76, both hemispheres 2287.6
2527 Male, age 74, both hemispheres 2206.3
2749 Male, age 80, left hemisphere 2204.2
Hippocampus, CA2
nTPM: 2280.5
1963 Male, age 80, left hemisphere 2367.1
2249 Male, age 74, both hemispheres 2325.0
2113 Female, age 91, right hemisphere 2291.2
1940 Female, age 85, left hemisphere 2258.9
1892 Male, age 76, both hemispheres 2232.6
2437 Female, age 94, left hemisphere 2207.8
Hippocampus, CA3
nTPM: 2229.8
1867 Male, age 76, both hemispheres 2364.2
2436 Male, age 74, both hemispheres 2298.4
2137 Male, age 80, left hemisphere 2219.3
1891 Female, age 85, both hemispheres 2206.7
2861 Female, age 67, both hemispheres 2194.3
2620 Female, age 94, left hemisphere 2095.8
Parahippocampal cortex
nTPM: 2143.7
2018 Male, age 76, both hemispheres 2406.1
1990 Female, age 91, right hemisphere 2192.8
1850 Male, age 80, both hemispheres 2168.9
1933 Female, age 85, both hemispheres 2150.7
2250 Female, age 67, right hemisphere 2144.6
2692 Male, age 74, both hemispheres 2105.7
2245 Female, age 91, both hemispheres 2088.2
2622 Female, age 67, right hemisphere 2069.0
2532 Female, age 72, left hemisphere 2061.6
2693 Female, age 94, both hemispheres 2049.1
Perirhinal gyrus
nTPM: 2147.7
1841 Female, age 85, right hemisphere 2180.2
1847 Female, age 91, left hemisphere 2147.4
1794 Male, age 80, right hemisphere 2144.6
2521 Female, age 94, right hemisphere 2142.1
2848 Male, age 76, right hemisphere 2124.4
Subiculum
nTPM: 2228.7
2042 Male, age 76, both hemispheres 2406.6
2729 Female, age 91, right hemisphere 2324.4
1977 Female, age 85, both hemispheres 2296.7
1901 Male, age 80, both hemispheres 2190.7
2619 Male, age 74, both hemispheres 2136.6
2438 Female, age 94, left hemisphere 2016.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 2737.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 2737.8
Samples: 197

Max nTPM: 6073.4
Min nTPM: 1364.8
Std nTPM: 782.0
Median nTPM: 2577.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 6073.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 5542.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 5022.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 4929.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 4707.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 4392.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 4365.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 4207.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 4138.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 4122.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 4101.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.5
FF:10169-103B7 60 years, female 24.0
FF:10153-102I9 76 years, female 23.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1708.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1708.6
Samples: 4

Max nTPM: 2202.5
Min nTPM: 1207.4
Sample A Female 2202.5
Sample B Female 1672.1
Sample C Male 1752.2
Sample D Male 1207.4
Entorhinal cortex
nTPM: 1221.9
Samples: 4

Max nTPM: 1597.6
Min nTPM: 828.2
Sample A Female 1114.8
Sample B Female 1597.6
Sample C Male 1347.1
Sample D Male 828.2
Subiculum
nTPM: 1318.8
Samples: 4

Max nTPM: 1701.6
Min nTPM: 1062.3
Sample A Female 1701.6
Sample B Female 1346.3
Sample C Male 1062.3
Sample D Male 1164.8
Ventral hippocampus
nTPM: 1530.2
Samples: 4

Max nTPM: 1664.2
Min nTPM: 1316.5
Sample A Female 1553.1
Sample B Female 1316.5
Sample C Male 1664.2
Sample D Male 1586.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3556.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3081.0
Samples: 4

Max nTPM: 3419.6
Min nTPM: 2811.1
Sample A Male 2964.0
Sample B Male 2811.1
Sample C Female 3419.6
Sample D Female 3129.4
Hippocampal formation
nTPM: 3556.0
Samples: 4

Max nTPM: 3984.3
Min nTPM: 3294.1
Sample A Male 3984.3
Sample B Male 3294.1
Sample C Female 3591.3
Sample D Female 3354.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 30.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 30.8
632492 Antisense, RP_040907_01_D12, Mouse strain C57BL/6J (56 days, male) 31.7
73817934 Antisense, RP_051214_01_A05, Mouse strain C57BL/6J (56 days, male) 29.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.